Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq23 159 5e-34 seq10 156 6e-33 seq43226 145 1e-29 seq101900 140 4e-28 seq7820 140 4e-28 seq12 127 3e-24 seq22 107 3e-18 >seq23 Length=49854004 Score = 159 bits (176), Expect = 5e-34 Identities = 271/393 (69%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| || || || |||||||| ||||| || || |||||| | ||| Sbjct 48664789 CCTCTGAGCCAGGAGGAAACGGACTTCCCCATCGCTTACTCCATGGTCATCCACGAGAAG 48664848 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||||||| | |||||| | || | ||| | ||||||||| ||||||||||| Sbjct 48664849 ATTGAGATGTTCGAGAGGCTCCTGCGTGCTTTGTACACTCCGCAGAACGTCTACTGCGTC 48664908 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||| ||| || || ||| || |||| | | || || || || ||| Sbjct 48664909 CACGTCGACCAGAAATCATCCGAGGACTTCAGGAGTGCAGTGAGAGCTATTGCTTCCTGC 48664968 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 || || || ||| ||||| | | |||| | |||| ||||||| | Sbjct 48664969 TTACCCAATGTGTTTGTGGCCAGTAAGACAGAGAGCGTGATCTACGCCTCCTGGTCCAGA 48665028 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 |||||||| ||||| | ||||||| ||||||| || || ||| ||||||| ||| Sbjct 48665029 GTGCAGGCTGACCTGAACTGCATGGAGGACCTGCTAAAGTCACCTGTCCAGTGGAGATAC 48665088 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 || |||||| || || | |||||||| | ||||||||| ||||| || | ||| Sbjct 48665089 CTTCTCAACACCTGTGGAACCGACTTCCCCATTAAGACCAACGCTGAGATGGTCCAGGCC 48665148 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG 14063 || ||| ||| ||| |||||| | ||||| Sbjct 48665149 CTCAAGCTGCTGAACGGGAAGAACAGCATGGAG 48665181 >seq10 Length=116138521 Score = 156 bits (172), Expect = 6e-33 Identities = 435/661 (66%), Gaps = 20/661 (3%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| || ||||| |||||||||||||| || || |||||| | ||| Sbjct 115575392 CCTCTGAGCCAGGAGGAAAAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACGAGAAG 115575333 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| ||| | |||||| | || | ||| | ||||||||| ||||||||||| Sbjct 115575332 ATTGAGATGTTTGAGAGGCTCCTGCGTGCTTTGTACACTCCGCAGAACGTCTACTGCGTC 115575273 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | ||| || || ||| || |||| | | || || || || ||| Sbjct 115575272 CACATCGACCAGAAATCATCCGAGGACTTCAGGAGTGCAGTGAGAGCTATTGCTTCCTGC 115575213 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 || || || ||| ||||| | | ||| | |||| ||||||| | Sbjct 115575212 TTACCCAATGTGTTTGTGGCCAGTAAGACAGAGAGTGTGATCTACGCCTCCTGGTCCAGA 115575153 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 |||||||| ||||| | ||||||| ||||||| || || ||| ||||||| ||| Sbjct 115575152 GTGCAGGCTGACCTGAACTGCATGGAGGACCTGCTAAAGTCACCTGTCCAGTGGAGATAC 115575093 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 || |||||| || || | |||||||| | ||||||||| ||||| || | ||| Sbjct 115575092 CTTCTCAACACCTGTGGAACCGACTTCCCCATTAAGACCAACGCTGAGATGGTCCAGGCC 115575033 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTG 14090 || ||| ||| ||| |||||| | ||||| |||| || ||||| || | | Sbjct 115575032 CTCAAGCTGCTGAACGGGAAGAACAGCATGGAGTCAGAGGTCA---CCAACAACTATAAG 115574976 Query 14091 CACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGG 14150 | ||| || || ||| | || || | | ||||||| || | ||| Sbjct 115574975 AAGGGCAGATGGCAGTTCCACCACAACGTCACCGACACC---GTGGTCAGGACAG--AGG 115574921 Query 14151 --AACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGG 14208 || ||| |||| || || ||| | |||||| || | || ||||| ||||||| || Sbjct 115574920 TTAAGAAGACCCCTCCACCAATCAACACCCCCATGTTCTCTGGCAACGCCTACTTTGTGG 115574861 Query 14209 TCACCCGGGAGTTCGTGGACTTCGTC-CTCAAGGACGAG-CCGGTGGCCC---TGCTCAT 14263 | || ||| |||| | |||| | | || ||| | || || || | || | Sbjct 115574860 TATCCAGGGCCTTCG-----TCCGTCACGTGATGAAGAGTCAGGAGGTCCGAGTTCTGCT 115574806 Query 14264 GCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAAT 14323 | | ||| ||||||| || || || || || ||||||||||| || ||||| | || Sbjct 115574805 GGAGTGGGAGAAGGACACCTATAGTCCTGATGAACACCTGTGGGCGACTCTGCAGCGGAT 115574746 Query 14324 G 14324 | Sbjct 115574745 G 115574745 >seq43226 Length=4303 Score = 145 bits (160), Expect = 1e-29 Identities = 254/368 (69%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || || || | ||| |||| ||||| |||||||||||||| || || |||||||||||| Sbjct 2323 CCTCTCAGTCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACCACAAG 2264 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| ||||| ||||| | ||| | ||| | || |||||| | ||||||||| Sbjct 2263 ATTGAGATGTTTGAGCGGCTCCTACGTGCCGTGTACACTCCTCAGAACGTGTACTGCGTC 2204 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | || ||||| ||| || |||| || || ||| |||| || Sbjct 2203 CACATCGATCAGAAGTCATCCGAGGACTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGT 2144 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 | ||||| ||| ||||| | | | ||||| |||| ||||||| | Sbjct 2143 CTGCCTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTGGTATACGCCTCCTGGTCCAGA 2084 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCT--GGACGCCTCCCCCGTCAAGTGGAGGT 13968 |||||||| || || | ||| ||| ||| || || | || | ||| ||||||||| Sbjct 2083 GTGCAGGCTGATCTGAACTGTATGGAGGATCTCCTGAAG--TCAGCTGTCCAGTGGAGGT 2026 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 ||||| ||||| || || | |||||||| | ||||||||| ||||| || | || Sbjct 2025 ACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGG 1966 Query 14029 CGCTGAAG 14036 | || ||| Sbjct 1965 CCCTCAAG 1958 >seq101900 Length=11458 Score = 140 bits (154), Expect = 4e-28 Identities = 253/368 (69%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || || || | ||| |||| ||||| |||||||||||||| || || |||||||||||| Sbjct 1582 CCTCTCAGTCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACCACAAG 1523 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| || || ||||| | ||| | ||| | || |||||| | ||||||||| Sbjct 1522 ATTGAGATGTTTGAACGGCTCCTACGTGCCGTGTACACTCCTCAGAACGTGTACTGCGTC 1463 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | || ||||| ||| || |||| || || ||| |||| || Sbjct 1462 CACATCGATCAGAAGTCATCCGAGGACTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGT 1403 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 | ||||| ||| ||||| | | | ||||| |||| ||||||| | Sbjct 1402 CTGCCTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTGGTATACGCCTCCTGGTCCAGA 1343 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCT--GGACGCCTCCCCCGTCAAGTGGAGGT 13968 |||||||| || || | ||| ||| ||| || || | || | ||| ||||||||| Sbjct 1342 GTGCAGGCTGATCTGAACTGTATGGAGGATCTCCTGAAG--TCAGCTGTCCAGTGGAGGT 1285 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 ||||| ||||| || || | |||||||| | ||||||||| ||||| || | || Sbjct 1284 ACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGG 1225 Query 14029 CGCTGAAG 14036 | || ||| Sbjct 1224 CCCTCAAG 1217 >seq7820 Length=3681 Score = 140 bits (154), Expect = 4e-28 Identities = 253/368 (69%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || || || | ||| |||| ||||| |||||||||||||| || || |||||||||||| Sbjct 2091 CCTCTCAGTCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACCACAAG 2032 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| || || ||||| | ||| | ||| | || |||||| | ||||||||| Sbjct 2031 ATTGAGATGTTTGAACGGCTCCTACGTGCCGTGTACACTCCTCAGAACGTGTACTGCGTC 1972 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | || ||||| ||| || |||| || || ||| |||| || Sbjct 1971 CACATCGATCAGAAGTCATCCGAGGACTTCAGGACGGCAGTGAGGGCTATCGTGTCCTGT 1912 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 | ||||| ||| ||||| | | | ||||| |||| ||||||| | Sbjct 1911 CTGCCTAATGTGTTTGTGGCCAGTAAGTTAGAGAGTGTGGTATACGCCTCCTGGTCCAGA 1852 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCT--GGACGCCTCCCCCGTCAAGTGGAGGT 13968 |||||||| || || | ||| ||| ||| || || | || | ||| ||||||||| Sbjct 1851 GTGCAGGCTGATCTGAACTGTATGGAGGATCTCCTGAAG--TCAGCTGTCCAGTGGAGGT 1794 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 ||||| ||||| || || | |||||||| | ||||||||| ||||| || | || Sbjct 1793 ACCTGATCAACACCTGTGGAACAGACTTCCCCATTAAGACCAACGCTGAGATGGTTCAGG 1734 Query 14029 CGCTGAAG 14036 | || ||| Sbjct 1733 CCCTCAAG 1726 >seq12 Length=91880962 Score = 127 bits (140), Expect = 3e-24 Identities = 252/366 (69%), Gaps = 14/366 (4%) Strand=Plus/Plus Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA---TCCAC 13724 || || ||||||| ||| |||| || | || | |||| | ||| | | ||||| Sbjct 37910140 AGCCCGCTGAGCCGGGAGGAGGAAGACTACCCTCTGGCCTTC---ATCCTCACTGTCCAC 37910196 Query 13725 CACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTAC 13784 | || | ||| |||| | |||||| ||| ||||||||||| | |||||||| ||||| Sbjct 37910197 AAGGAGCTGGAGCTGTTGGTGCGCCTGCTGCGGGCCATCTACACGCCGCAGAATGTCTAC 37910256 Query 13785 TGCGTCCACGTGGACTCCAAGTC-CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGC 13843 || |||||||||||| ||||| | | ||| |||| || | ||| | | | | Sbjct 37910257 TGTGTCCACGTGGACGCCAAGGCTCCGCG-GGAGTACAGGGAAGCCGTGGAGAGCCTTGT 37910315 Query 13844 CAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTG---TACGGCTC 13900 | |||||||| || ||| ||||| ||| | | | ||| ||||| |||| | Sbjct 37910316 GGGCTGCTTCCCCAATGTGTTCCTGG-CCAGCCACAG--CGAGATGGTGACCTACGCCGG 37910372 Query 13901 CTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAA 13960 || || ||||||||||| ||| ||||||| |||||||| || || || || Sbjct 37910373 CTTCTCACGGCTGCAGGCCGACATCAACTGCATGAGGGACCTGGCGGCGTCGCCTGTGCC 37910432 Query 13961 GTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGAT 14020 |||||| | |||||||||| ||||| |||||| || | |||| |||| ||||| | Sbjct 37910433 CTGGAGGAAGGTGCTCAACCTTTGCGGCCAGGACTTTCCTGTAAAGAGCAACATGGAGCT 37910492 Query 14021 CGTGCG 14026 ||||| Sbjct 37910493 GGTGCG 37910498 Score = 116 bits (128), Expect = 5e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 13643 CGTGAAAGACAGGGGGTATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCAT 13702 ||| | |||||| |||| || ||| ||||||||| |||| ||| || || ||||| Sbjct 29290770 CGTTACAGACAGAGGGTTCGTCATGATGCCCCTGAGTGTGGAGGAGAGAGACTTCCCCAT 29290829 Query 13703 CGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCAT 13762 ||||||||| || ||| |||| | ||||| |||||||| ||||| |||||| | ||| | Sbjct 29290830 CGCCTACTCCATGGTGGTCCATGAGAAGATTGAGATGTTTGAGCGACTCCTGCGTGCCGT 29290889 Query 13763 CTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 ||| | || ||||| | |||||||| || |||||| Sbjct 29290890 GTACACACCTCAGAATGTATACTGCGTGCATGTGGAC 29290926 >seq22 Length=63420196 Score = 107 bits (118), Expect = 3e-18 Identities = 214/312 (69%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| | || | ||| || | | |||||| |||||||||||||| || || ||||| Sbjct 50127824 TCCACAAGGAGCTGGAGCTGCTTGTGCGCCTGCTGAGGGCCATCTATGCACCCCAGAATA 50127765 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 |||| || ||||| |||||| |||| | | |||| || | ||| | Sbjct 50127764 TCTATTGTGTCCATGTGGACGTCAAGGCTCCACAGGAGTACAGTGAAGCCGTGGAAAGCC 50127705 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTG---TACG 13896 | | | |||||||| |||||| ||||||| ||| | || || ||||| |||| Sbjct 50127704 TGGTGGGCTGCTTCCCCAACGTGTTCCTGGCCAGCCG-CAGCGAGA--TGGTGACCTACG 50127648 Query 13897 GCTCCTGGAGTCGCG--TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCC 13954 | || ||||| | ||||| ||| ||| ||| ||| |||||||| || || | Sbjct 50127647 CCGGCTTC--TCGCGGCTACAGGCTGACATCAACTGTATGAGGGACCTGGCGGCATCTAC 50127590 Query 13955 CGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCT 14014 || |||||| | || ||||||||||||| ||||||||| |||||| |||||| Sbjct 50127589 GGTGCCCTGGAGGAAGGTGGTCAACCTGTGCGGCCAGGACTTCCCCGTCAAGAGCAACCT 50127530 Query 14015 GGAGATCGTGCG 14026 |||| | ||||| Sbjct 50127529 GGAGCTGGTGCG 50127518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656827580012800