Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq29 138 9e-28 seq19 136 3e-27 >seq29 Length=42488238 Score = 138 bits (152), Expect = 9e-28 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| |||||||| | ||||||||||||||| ||||| Sbjct 12016575 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 12016516 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | |||||||||||||| | |||||| ||||| ||||| | ||| || || | Sbjct 12016515 ACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATG 12016456 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || || ||||| |||| ||| ||||| || || || ||||| || || |||| Sbjct 12016455 ACATAGAACTGGCACAGGGCATGGCAGGGGGGCAGCACCATGTGGGGCAGGTCT 12016402 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| ||||| || | |||||||||||||| || ||||| ||||||| ||| Sbjct 12016047 CATGTCGCTGTATTCTGCACCATAGTGCCTCCACTGGAAACCATACACGGGTCCCAAGTC 12015988 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCC-TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||| |||| || || || |||| | ||||||| || | ||| || || || |||| Sbjct 12015987 TCCCTCCTCCCGGT-CTGTAAACCCCATTTTGTCCAGGAACTGTCTCGATCCATTTGCGT 12015929 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||| | ||||| ||||| | |||||| || | ||||| || || Sbjct 12015928 CCCAGATCCTCACCCCTTTCTCTGTGAGCTCCTTAGCATTTGTTGAGCC 12015880 >seq19 Length=82978132 Score = 136 bits (150), Expect = 3e-27 Identities = 128/162 (79%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||||| | ||||||||||||||| ||||| Sbjct 29462964 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGC 29462905 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | |||||||||||||| | ||| || ||||| |||| |||| ||||| | Sbjct 29462904 ACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATT 29462845 Query 30062 ACGTAAAACTGACACATGGCGTGGCA-CGGAGGAAGAGCCAT 30102 ||||| |||||||||| ||| ||||| || ||||| ||||| Sbjct 29462844 ACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Score = 125 bits (138), Expect = 6e-24 Identities = 126/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| || || || | |||||||||||||| | ||||| ||||||||||||||||| | Sbjct 29462515 TGTATTCCGCACCATAGTGCCTCCACTGGAAACTATACACTGGTCCCAGGTCTCCCTCAT 29462456 Query 30291 CCCTGTGCTC-GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 ||| || ||| ||| ||| |||||||||| |||| | ||| |||| || ||||| || Sbjct 29462455 CCCGGT-CTCTGAACCCCATCTTGTCCAAGAAGTGTTGGGACCCGTATGCATCCCAAATA 29462397 Query 30350 TTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 || ||||| ||||| ||| |||| |||| ||||| || || Sbjct 29462396 TTCACCCCTTTCTCTGAGTGCTCCTTGGCATTTGTTGAGCC 29462356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405160789798260