Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 118 9e-22 seq23 104 2e-17 seq13 100 2e-16 >seq11 Length=93888508 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || ||| | Sbjct 55250353 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTTGAGCCGAGC 55250294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||| || || || || Sbjct 55250293 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 55250234 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| || || | ||||| |||||| Sbjct 55250233 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTCTCCGACTACAAC 55250174 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||| | || | ||| || |||| || || Sbjct 55250173 ATCCAAAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGGTAT 55250124 >seq23 Length=49854004 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || |||| || || | || || ||||| || || || | Sbjct 40743966 ATGCAGATATTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCCAGC 40744025 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || || || |||||||| || || ||||| Sbjct 40744026 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 40744085 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||||||| | || || || ||| | || || || ||| Sbjct 40744086 CAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTATAAC 40744145 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | ||| | || ||||| | || || ||||| Sbjct 40744146 ATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGGCAT 40744195 >seq13 Length=107758822 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || || | Sbjct 72692619 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72692560 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || ||||| || || || || Sbjct 72692559 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 72692500 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||||||| || ||||||| | ||| | || ||||||||| Sbjct 72692499 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGATTACAAC 72692440 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | || ||||| | |||| || || Sbjct 72692439 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGGTAT 72692390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433691037581915