Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq29 134 1e-26 seq19 105 6e-18 >seq29 Length=42488238 Score = 134 bits (148), Expect = 1e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||| ||| ||||| ||||| |||| ||||| ||||| ||| |||||||| |||| Sbjct 12016415 ATGGTGCTGCCCCCCTGCCATGCCCTGTGCCAGTTCTATGTCATTGATGGGGAGTTGTCG 12016474 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| || || || ||||| |||||||| || || ||||| |||||||| || || Sbjct 12016475 TGCCAGCTGTACCAGCGCTCGGGGGACATGGGCTTGGGAGTGCCCTTCAACATCGCCAGC 12016534 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || ||||| ||||||||||| || Sbjct 12016535 TACGCCCTCCTCACCTACATGATCGCCCA 12016563 Score = 134 bits (148), Expect = 1e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || ||||| || || |||||||| ||||| || || ||| Sbjct 12016563 TGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGCACTCCCAAGCCC 12016504 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| || || || |||||||| |||| |||||||| ||| ||||| ||| Sbjct 12016503 ATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATGACATAGAACTGG 12016444 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || |||| ||||| ||||| ||| |||| Sbjct 12016443 CACAGGGCATGGCAGGGGGGCAGCACCAT 12016415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 ||||||| |||||||||||| | || || || | || |||||||| |||||| || Sbjct 12015913 GGGGTGAGGATCTGGGACGCAAATGGATCGAGACAGTTCCTGGACAAAATGGGGTTTACA 12015972 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 ||||||||||| |||||||| || || || || ||||||||||| |||| ||| || Sbjct 12015973 GACCGGGAGGAGGGAGACTTGGGACCCGTGTATGGTTTCCAGTGGAGGCACTATGGTGCA 12016032 Query 34442 GAGTA 34446 || || Sbjct 12016033 GAATA 12016037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||| |||| ||||||||||| || || || || |||||||| ||||||||| Sbjct 12016037 TATTCTGCACCATAGTGCCTCCACTGGAAACCATACACGGGTCCCAAGTCTCCCTCCTCC 12015978 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || || |||||| |||||||| || | || || || | |||||||||||| || Sbjct 12015977 CGGTCTGTAAACCCCATTTTGTCCAGGAACTGTCTCGATCCATTTGCGTCCCAGATCCTC 12015918 Query 7019 ACCCC 7023 ||||| Sbjct 12015917 ACCCC 12015913 >seq19 Length=82978132 Score = 105 bits (116), Expect = 6e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 34577 ATGGCGCT-CCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||||| |||||| ||||| |||| || || || ||||| | ||| ||||| | Sbjct 29462803 ATGGCGCTTCCCCCCCTGCCATGCCCTGTGTCAGTTGTACGTAATTGACGGGAAGCTGCC 29462862 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||| ||||| | ||||| |||||||| || ||||| |||||||| || || Sbjct 29462863 GTGCCAGCTGTATCAGTGCTCGGGGGACATGGGCCAGGGAGTGCCCTTCAACATCGCCAG 29462922 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| | ||||| ||||||||||| || Sbjct 29462923 CTACGCCATCCTCACCTACATGATCGCCCA 29462952 Score = 105 bits (116), Expect = 6e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| | ||||| || || |||||||| ||||| || ||| Sbjct 29462952 TGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGCACTCCCTGGCCC 29462893 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| | ||||| |||||||| | ||||| ||| | ||||| || || Sbjct 29462892 ATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATTACGTACAACTGA 29462833 Query 6740 CAGAGGGTGTGGCACGGGGGG-AGCGCCAT 6768 || |||| ||||| |||||| |||||||| Sbjct 29462832 CACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 |||||||| || ||||| || ||||||| | | |||| |||||||| ||||||| | Sbjct 29462389 GGGGTGAATATTTGGGATGCATACGGGTCCCAACACTTCTTGGACAAGATGGGGTTCAGA 29462448 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 ||||| ||||| ||| |||| || || || | ||||||||||| |||| ||| ||| Sbjct 29462449 GACCGGGATGAGGGAGACCTGGGACCAGTGTATAGTTTCCAGTGGAGGCACTATGGTGCG 29462508 Query 34442 GAGTA 34446 || || Sbjct 29462509 GAATA 29462513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || ||||| ||| |||| ||||||||||| | || || || |||| ||| ||||| ||| Sbjct 29462513 TATTCCGCACCATAGTGCCTCCACTGGAAACTATACACTGGTCCCAGGTCTCCCTCATCC 29462454 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | ||||||| |||||||| |||| | | ||||||| || ||||| || ||| Sbjct 29462453 CGGTCTCTGAACCCCATCTTGTCCAAGAAGTGTTGGGACCCGTATGCATCCCAAATATTC 29462394 Query 7019 ACCCC 7023 ||||| Sbjct 29462393 ACCCC 29462389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446961570531600