Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq29 111 1e-19 seq19 104 2e-17 seq14 91.5 1e-13 >seq29 Length=42488238 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || ||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| Sbjct 23332150 GAGGAGCTCTTCCGCGACGGTGTAAACTGGGGTCGGATTGTGGCTTTCTTTGAGTTTGGA 23332209 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || ||||| ||||| |||||||| | | || | ||| || |||||||||||| Sbjct 23332210 GGGACAATGTGCGTGGAGAGCGTCAACCGGGAGATGACGACCCAGGTAGACAACATTGCC 23332269 Query 3371 GCGTGGATGACAGA 3384 ||||||||||| Sbjct 23332270 CATTGGATGACAGA 23332283 >seq19 Length=82978132 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 |||||||||||| | || |||||||||||||| || ||||| ||||||||||||||||| Sbjct 70681641 GATGAGCTCTTCAGCGACGGGGTAAACTGGGGTCGGATTGTGGCTTTCTTTGAGTTTGGA 70681582 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || ||||| ||||| |||||||| | | || | |||| || |||||||| || Sbjct 70681581 GGGACAATGTGCGTGGAGAGCGTCAACCGGGAGATGACGTCCCAGGTAGACAACATCGCT 70681522 Query 3371 GCGTGGATGA 3380 ||||||| Sbjct 70681521 CGTTGGATGA 70681512 >seq14 Length=93901823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || ||||| ||| | || ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 26917621 GACGAGCTGTTCAGGGACGGGGTTAACTGGGGACGAATTGTCGCCTTCTTCGAGTTCGGG 26917562 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || || ||||||||| |||| || | | || | || | |||||| |||| ||| Sbjct 26917561 GGCACAATATGTGTGGAATGCGTGAACAAGGAAATGACGTCGCAGGTTGACCACATCGCC 26917502 Query 3371 GCGTGGATGACAGACCAGCTGGGTGGAGAGGTTGGTTTGTGGATCCAAGAGAACGGAGGA 3430 | ||||||||| || | || |||| | | ||||| ||||||||||| ||| Sbjct 26917501 GGGTGGATGACGGAGTATCTAAATGGACCGCTGCACAGCTGGATTCAAGAGAACGGGGGA 26917442 Query 3431 TGG 3433 ||| Sbjct 26917441 TGG 26917439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413304083875420