Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq4 104 2e-17 seq1 104 2e-17 seq23 91.5 1e-13 >seq11 Length=93888508 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| ||| ||||| || || || |||| Sbjct 55250127 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 55250186 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || |||||||||||||| | ||| Sbjct 55250187 AGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 55250246 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || ||||||| ||| || Sbjct 55250247 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTCGGCTCAACC 55250306 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 55250307 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| ||| || || || || || |||| Sbjct 55250355 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 55250414 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| || || || |||||||||||||| | ||| Sbjct 55250415 AGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 55250474 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || || || | |||||| Sbjct 55250475 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 55250534 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || || || || || |||||||| ||||| Sbjct 55250535 TCTAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 55250581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||| || || || || || |||| || || || | || || Sbjct 55249917 ACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCC 55249976 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || || ||||||||||| | ||| | || ||| |||||| | Sbjct 55249977 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 55250036 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || |||| ||| || |||| ||||| | || Sbjct 55250037 ATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTCAACCTCCAGGGTGATGGTCTTA 55250096 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 55250097 CCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 >seq4 Length=82398023 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51880839 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51880780 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51880779 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51880720 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51880719 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51880660 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 ||| || | ||||| | || || || || || || || ||||| ||||||||||| || Sbjct 51880659 CACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATCTTTACACC 51880600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51881067 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51881008 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51881007 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51880948 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51880947 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51880888 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | || || |||| || || || || || || ||||| ||||| Sbjct 51880887 CACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51880837 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51881295 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51881236 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51881235 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51881176 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51881175 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51881116 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | || || |||| || || || || || || ||||| ||||| Sbjct 51881115 CACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881065 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51881523 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51881464 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51881463 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51881404 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51881403 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51881344 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | || || |||| || || || || || || ||||| ||||| Sbjct 51881343 CACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51881751 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51881692 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51881691 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51881632 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51881631 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51881572 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | || || |||| || || || || || || ||||| ||||| Sbjct 51881571 CACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||| | ||| || ||| |||||| || || || || || Sbjct 51881979 CATGCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 51881920 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || || || || |||||||||||||| | Sbjct 51881919 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGG 51881860 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| ||| || || | || | | || || || | ||| Sbjct 51881859 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 51881800 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || | || || |||| || || || || || || ||||| ||||| Sbjct 51881799 CACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| |||||| || || || || |||| Sbjct 51882203 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 51882144 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || || |||||||||||||| | ||| Sbjct 51882143 AGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 51882084 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || || | || | | || || || | |||||| Sbjct 51882083 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 51882024 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || || || || || || ||||| ||||| Sbjct 51882023 TCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881977 >seq1 Length=159038749 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| ||| || || || || || |||| Sbjct 137746850 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746791 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 137746790 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746731 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || || || | ||| || Sbjct 137746730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746671 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || ||||| |||||||| ||||| ||||| Sbjct 137746670 TCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | ||| || ||| ||| || || || || || |||| Sbjct 137746622 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746563 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 137746562 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746503 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||| || |||| || | | || || || | ||| || Sbjct 137746502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746443 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || | ||||| | || || || || || || |||||||| |||||||| || Sbjct 137746442 TCAAGGGTGATGGTCTTACCAGTTAGGGTCTTCACAAAGATCTGCATCTTGAC 137746390 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||| || || || || || |||| || || || | || || Sbjct 137747060 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 137747001 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || ||||| || |||||||||||||| | ||| | || ||| |||||| | Sbjct 137747000 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 137746941 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | ||| || || | ||||| | || Sbjct 137746940 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTA 137746881 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||| ||||| ||||| Sbjct 137746880 CCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 >seq23 Length=49854004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG- 39115 |||||| | | || | ||| | ||| || ||| |||||| || || ||||| || | Sbjct 40744193 GCCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGA 40744134 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 |||| || || | || ||||| |||||||| || || || ||||||||||| || | | Sbjct 40744133 CAAG-GTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 40744075 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || || || ||| ||| || |||| | | | |||||||| | ||| | Sbjct 40744074 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAA 40744015 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || | ||||| |||| ||||||| ||| || || || || |||||||| Sbjct 40744014 CCTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCATCTT 40743963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428330248377515