Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq4 107 1e-18 seq23 100 2e-16 seq13 98.7 7e-16 >seq1 Length=159038749 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || ||||| || || ||||| ||| Sbjct 137746624 ATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 137746683 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || ||||| || Sbjct 137746684 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 137746742 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 137746743 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 137746802 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 137746803 CATCCAGAAGGAGTCCAC 137746820 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||| || || ||||| || Sbjct 137746393 AAGATGCAGATCTTTGTGAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTTGAGCCC 137746452 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| || || | || ||||| Sbjct 137746453 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGA 137746511 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||||||||| || |||||||| | ||||| | ||| || Sbjct 137746512 CCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 137746571 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 137746572 CAACATCCAGAAGGAGTCCAC 137746592 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||||| || || || || ||||| || || ||||| ||| Sbjct 137746852 ATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 137746911 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| || Sbjct 137746912 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 137746971 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || |||||||| | ||||| | ||| |||||| Sbjct 137746972 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 137747031 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 137747032 ATCCAGAAGGAGTCCAC 137747048 >seq4 Length=82398023 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || |||||||| || || || ||||| || || || || || Sbjct 51880606 AAGATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGCCC 51880665 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| || || | || ||||| Sbjct 51880666 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGA 51880724 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||| || || |||||||||| ||||| | ||| || Sbjct 51880725 CCAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTA 51880784 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 51880785 CAACATCCAGAAAGAGTCCAC 51880805 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51880837 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51880896 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51880897 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51880955 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51880956 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51881015 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51881016 CATCCAGAAAGAGTCCAC 51881033 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51881065 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51881124 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51881125 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51881183 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51881184 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51881243 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51881244 CATCCAGAAAGAGTCCAC 51881261 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51881293 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51881352 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51881353 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51881411 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51881412 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51881471 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51881472 CATCCAGAAAGAGTCCAC 51881489 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51881521 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51881580 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51881581 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51881639 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51881640 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51881699 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51881700 CATCCAGAAAGAGTCCAC 51881717 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51881749 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51881808 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51881809 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51881867 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51881868 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51881927 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51881928 CATCCAGAAAGAGTCCAC 51881945 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || ||| Sbjct 51881977 ATGCAGATCTTCGTCAAGACCCTCACCGGTAAAACCATAACCCTTGAGGTGGAGCCCAGT 51882036 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || ||||| || Sbjct 51882037 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCCCCAGACCA 51882095 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||||| ||||| | ||| ||||| Sbjct 51882096 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAA 51882155 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 51882156 CATCCAGAAAGAGTCCAC 51882173 >seq23 Length=49854004 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || | ||||| ||||| ||||| || || ||||| || Sbjct 40743963 AAGATGCAGATATTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCCC 40744022 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| | || || || || || ||||| | || || ||| Sbjct 40744023 AGCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGAT 40744082 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||||||||| || || | ||||| || || || Sbjct 40744083 CAGCAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCAGACTAT 40744142 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 40744143 AACATCCAGAAAGAGTCCAC 40744162 >seq13 Length=107758822 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| | | Sbjct 72692619 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72692560 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | |||||||| || Sbjct 72692559 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCGCCAGACCA 72692501 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || |||||||| || |||||||| | ||||| | |||||||| Sbjct 72692500 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGATTACAA 72692441 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 72692440 CATCCAGAAAGAATCCAC 72692423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337053239334740