Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19 145 6e-30 seq29 143 2e-29 >seq19 Length=82978132 Score = 145 bits (160), Expect = 6e-30 Identities = 130/162 (80%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||||| | ||||||||||||||| |||||| Sbjct 29462964 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGC 29462905 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | ||||||||||| || | ||| || |||||||||| |||| ||||| | Sbjct 29462904 ACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATT 29462845 Query 29834 ACGTAAAACTGACACATGGCATGGCA-CGGAGGAAGGGCCAT 29874 ||||| |||||||||| ||||||||| || ||||| ||||| Sbjct 29462844 ACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Score = 122 bits (134), Expect = 7e-23 Identities = 115/144 (80%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 30020 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAAGCC 30078 |||||||||||||| | ||||| ||||||||||||||||| |||| || ||| ||| || Sbjct 29462498 TGCCTCCACTGGAAACTATACACTGGTCCCAGGTCTCCCTCATCCCGGT-CTCTGAACCC 29462440 Query 30079 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 30138 | |||||||||| |||| | ||| |||| || ||||| || || ||||| ||||| || Sbjct 29462439 CATCTTGTCCAAGAAGTGTTGGGACCCGTATGCATCCCAAATATTCACCCCTTTCTCTGA 29462380 Query 30139 GAGCTCTTTGGAGTTTGTGGACCC 30162 | |||| |||| ||||| || || Sbjct 29462379 GTGCTCCTTGGCATTTGTTGAGCC 29462356 >seq29 Length=42488238 Score = 143 bits (158), Expect = 2e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| |||||||| | ||||||||||||||| |||||| Sbjct 12016575 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 12016516 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || | ||||||||||| || | |||||| ||||||||||| | ||| || || | Sbjct 12016515 ACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATG 12016456 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 || || ||||| |||| ||||||||| || || || ||||| Sbjct 12016455 ACATAGAACTGGCACAGGGCATGGCAGGGGGGCAGCACCATG 12016414 Score = 113 bits (124), Expect = 4e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 30020 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30079 |||||||||||||| || ||||| ||||||| ||||||||| |||| || || || ||| Sbjct 12016022 TGCCTCCACTGGAAACCATACACGGGTCCCAAGTCTCCCTCCTCCCGGT-CTGTAAACCC 12015964 Query 30080 C-TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 30138 | | ||||||| || | ||| || || || |||||||||||| | ||||| ||||| | Sbjct 12015963 CATTTTGTCCAGGAACTGTCTCGATCCATTTGCGTCCCAGATCCTCACCCCTTTCTCTGT 12015904 Query 30139 GAGCTCTTTGGAGTTTGTGGACCC 30162 |||||| || | ||||| || || Sbjct 12015903 GAGCTCCTTAGCATTTGTTGAGCC 12015880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405014006284330