Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 4e-13 seq6 89.7 4e-13 >seq14 Length=93901823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/129 (76%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| |||||||||| || || ||||| || | || | || ||||| | ||||||| Sbjct 93502010 AACCT-CGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCT 93501952 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | |||| | ||||| ||||| ||||| || ||||| ||||| || || || || | Sbjct 93501951 TCTTCAACCAATAAATAGCTGCAAACGACCCCGAGAAGAAGATGCCCTCCACTGCAGCGA 93501892 Query 4687 ACGCTACTA 4695 |||| |||| Sbjct 93501891 ACGCCACTA 93501883 >seq6 Length=87043187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || || ||||| || || |||| || ||||| | || ||||| || Sbjct 51008539 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCTTT 51008480 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || ||||| || ||||||||||| || || || || || ||||| || Sbjct 51008479 AGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGGCA 51008420 Query 4692 AC 4693 || Sbjct 51008419 AC 51008418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425841310532615