Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq10 161 1e-34 seq3 159 5e-34 seq24 138 2e-27 seq20 132 7e-26 seq23 129 8e-25 >seq14 Length=93901823 Score = 161 bits (178), Expect = 1e-34 Identities = 250/355 (70%), Gaps = 3/355 (1%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| | | ||||| |||||| ||||| Sbjct 14382802 TCACCAATTAGGATGAGGCGTGTGGTCTGGAAGATGCGTTCGTCGTCCCATTCGGGATGC 14382743 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || |||| || || || || | |||||| || | |||||||| |||||||||||| Sbjct 14382742 TCCTGCCTCAGGACGTCACAGACACGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 14382683 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || |||||||||||| ||| || || ||||| | || | |||| | Sbjct 14382682 ATGAGGCCGGGGACCAGGCCAAAATGCTCGTGGCCCACAGCGAAGCGGTGCTCCTCGGCC 14382623 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 |||| ||| || ||| ||| | || || || | ||| | ||||| || | || Sbjct 14382622 ACTTGGGGTGGGTAGTGCATCTCGACTCCAACCTCCCTTACCAATGGGGGGTAGACCTCG 14382563 Query 9472 CCGTCAATCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTT 9531 || | | | ||||||||||| ||| || || ||||| || | |||||| |||| | Sbjct 14382562 CCATTCAAAACCTGATACTTCAGTTTGCCATCCTTGAACAGCCTCAGCTTGTGCTGTCTC 14382503 Query 9532 TCTGGCGTCTCTCCATAGATGTGGTTGAGATCCACCTAGAGATACAGATCGGTGA 9586 || | | |||||||| | ||||| | ||||||| || | ||||| ||||| Sbjct 14382502 TCCAGACTGTCTCCATAAACATGGTTTAAGTCCACCT-GAAACACAGA--GGTGA 14382451 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||||| ||||| || || || || | | || | |||||||| | || ||| Sbjct 14384622 CCCTTGACATTGCTGCACACCAGCCTCTCCAATGAAGCAGTGTTGACGATGTCAAAACCC 14384563 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 || || ||||| ||||||||| |||||||| |||| ||||| ||| ||| ||| | Sbjct 14384562 ACACTCCCTCCGAACGTGCTGGGCATCCAGTACTCCGGCGAGCAAATGGGGTTTCCCAGG 14384503 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 || ||||| |||||| | || || |||| ||||| || | || ||||| | ||||| Sbjct 14384502 AGACCTTTCAGGGAGTAGGGTGCACCCATCTCGACCATAGTTTCCCCGAAAACAGCGTTA 14384443 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || | ||| ||||||| | || | ||||||||||||||| || ||||| || || Sbjct 14384442 GGTCTGGGGCGCTCCACCAGAAGGCCTGGGTACAGCTCCACAGCATCTACGTCCCCATAT 14384383 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||||| ||||| | ||| | ||||||| Sbjct 14384382 AGACTCTCTAGTTCTGCAGCCAGCTCTGTCTCTCCTG 14384346 >seq10 Length=116138521 Score = 161 bits (178), Expect = 1e-34 Identities = 202/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||||||||||||| || || || ||| | | ||| | |||| ||| | || || Sbjct 47009875 CCCTTGACGTTGCTGCACACCAGCCTCTGTAAGGACGCGGTGTTGATGATGTCAAAGCCG 47009934 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 | | ||||| ||||||||||||||||||||| | || ||||| ||| ||| |||| Sbjct 47009935 ATGCTCCCGCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGGTTTCCCATC 47009994 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 |||||||| || || | || || |||| ||| | ||| |||| || |||||||| ||| Sbjct 47009995 AGGCCTTTCAGAGAATAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAGATGGCATTG 47010054 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | | |||||| ||||||| | || | ||| ||||||||||| || || | || || Sbjct 47010055 GTTCTGGGCTTCTCCACCAGCAGACCTGGGTAGAGCTCCACAGCATCCACATGCCCATAC 47010114 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || ||||| |||||||||||||||| Sbjct 47010115 ATCTCCTCCAGCTCTGCAGCCATCTCCTTTTCTCCTG 47010151 Score = 118 bits (130), Expect = 2e-21 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | |||||||| || || ||| ||| || || || | | ||||| Sbjct 47012321 ATGAGACGCGATGTCTGGAAGAGCCTATCATCATCCCAGTCCGGGTGGACCTCCTTCAGG 47012380 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | |||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 47012381 ACATCACAGACGCGGTTGTGTTCCCTCAGCCAGATAGTAGCGTACATCATGAGACCAGGC 47012440 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || || || || | |||||| Sbjct 47012441 ACCAGGCCGAACGCCTCATGGCCCACAGCGAAGCGGTGAGACTCAGGGACATGGGGAGGG 47012500 Query 9424 TAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCA 9481 ||| ||| | || ||| || ||||| |||| || || |||| || || || | || Sbjct 47012501 TAGTGCATATCAGCCCCT--ACCTCTTTCACCGTAGGTGGGTACACCTCTCCATCCAGCA 47012558 Query 9482 TCT 9484 || Sbjct 47012559 CCT 47012561 >seq3 Length=92503428 Score = 159 bits (176), Expect = 5e-34 Identities = 245/348 (70%), Gaps = 1/348 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| | | ||||| |||||| ||||| Sbjct 14959728 TCACCAATTAGGATGAGGCGTGTGGTCTGGAAAATGCGTTCGTCGTCCCATTCGGGATGC 14959669 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||| || || || || | ||||||||| || |||||||| |||||||||||| Sbjct 14959668 TCCTGCATCATGACGTCACAGACGCGGTTGTGTTCTCTCAGCCAGATGGTGGCGTACATC 14959609 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || |||||||| ||| ||| || || ||||| | || | ||| || Sbjct 14959608 ATGAGACCGGGGACCAGGCCGAAAAGCTCGTGGCCCACAGCGAAGCGGTGATCCTCGAGC 14959549 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||| |||||| ||| | || || || || ||| | ||||| || | || Sbjct 14959548 ACGTGGGGTGGATAGTGCATCTCGACTCCAACCTCCTTTACCAATGGGGGGTAGACCTCG 14959489 Query 9472 CCGTCAATCATCTGATACTTCATTTTTCCGTCTTTGAAGAGACGCAGCTTAGTCTGTTTT 9531 || | | | ||||||||||| ||| || | ||||| | | |||||| |||| | Sbjct 14959488 CCATTCACAACCTGATACTTCAGTTTGCCATTCTTGAACTGCCTCAGCTTGTGCTGTCTC 14959429 Query 9532 TCTGGCGTCTCTCCATAGATGTGGTTGAGATCCACCTAGAGATACAGA 9579 || | || |||||||||| |||| | ||||||| || | ||||| Sbjct 14959428 TCCAGAGTGTCTCCATAGACATGGTGTAAGTCCACCT-GAAACACAGA 14959382 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||||||| | || ||||| || ||||| ||||||||| ||||||| |||| ||| Sbjct 14963054 TTGACGATGTCAAAGCCCACAATCCCTCCGAACGTGCTGGGCATCCAGTATTCCGGCGAG 14962995 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 || ||| ||| ||| ||| ||||| ||||| | || | |||| || | || || Sbjct 14962994 CAAATGGGGTTTCCCAGGAGACCTTTCAGGGAATAGGGGGAGCCCATTTCTATCATAGTC 14962935 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || ||||||| | ||| || | ||| ||||||| | || | ||||||||||||| Sbjct 14962934 TCCCCGAAGACAGAGTTAGGTCTGGGGCGCTCCACCAGAAGGCCTGGGTACAGCTCCACA 14962875 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || || || | || || ||||| | ||| || ||||||| Sbjct 14962874 GCATCCACTTCCCCATATAGACTCTCCAGCTCCGCAGCCAGCTCTTTCTCTCCTG 14962820 >seq24 Length=48650976 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||| |||||||||||||||||| | ||||| ||||| ||| ||| |||||| Sbjct 26486909 CCTCCGAACGTGCTGGGCTTCCAGTACTCAGGGGAACAGATCGGGTTACCCAGAAGGCCT 26486968 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||||||||||||||||| ||| | |||||||| || || ||||||||||| || Sbjct 26486969 TTCAGGGAGAACGGAGCCCCCATCTCCACCATGCTCTCGCCAAATATGGCGTTGGGGCGT 26487028 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||| |||| || || | | ||| | ||||| || |||| ||| || || || Sbjct 26487029 GTCTTCTCCAGCATGAGGGCAGGGTAGAACTCCAGCGCATCGATGTCACCATAGAG 26487084 >seq20 Length=86795997 Score = 132 bits (146), Expect = 7e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || |||||||||||||||||| | ||||| |||||| ||| ||| |||||| Sbjct 17085562 CCTCCAAATGTGCTGGGCTTCCAGTACTCAGGGGAACAGATGGGGTTACCCAGAAGGCCT 17085503 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || |||||||| |||||||||| ||| | ||||||||||| || ||||||||||| || Sbjct 17085502 TTCAGGGAGAATGGAGCCCCCATCTCCACCATGCTCTCACCAAATATGGCGTTGGGGCGT 17085443 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||| |||| || || | | ||| | ||||| || || | ||| || || || Sbjct 17085442 GTCTTCTCCAGCATGATGGCAGGGTAGAACTCCAGCGCATCAATGTCACCATAGAG 17085387 >seq23 Length=49854004 Score = 129 bits (142), Expect = 8e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || ||||||||||||||||||||| | || || || ||| || |||| |||||| Sbjct 4750752 CCACCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAACAAATGGGATTTCCCATCAGGCCT 4750693 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || |||||| | || || |||| ||| | ||| |||| || |||||||| |||| | Sbjct 4750692 TTCAGGGAGTAGGGGGCGCCCATCTCCACCATGGTCTCCCCAAAGATGGCATTGGTTCTT 4750633 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| ||||||| | || | ||| ||||||||||| || || | ||| || | || Sbjct 4750632 GGCTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACAGCATCCACATGTCCATACATCTCC 4750573 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || ||||| |||||| | || |||| Sbjct 4750572 TCCAGCTCAGCAGCCATCTCCGTATCCCCTG 4750542 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTA 9706 || || ||||| || ||| |||||||||||||||| || | | |||| | Sbjct 4744572 GTACTCACCCCGTGGCCCTTGGCTTTAGTGAAGGCCGGCCCCATCTTCTGGTCAGATTTG 4744513 Query 9707 AAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGA 9766 || |||||||| ||||| |||||| |||| ||||||||||| | ||| |||||| || Sbjct 4744512 AAGAACTGGTGGGTGAAGTGTTGGGCAAAGAAGGCAAACATCAGACTGGAGCCCTGAGGG 4744453 Query 9767 TCGGGAGTGAAGGTCCTCC-GAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 9825 || || | || |||||| || | ||| || || || | | | | ||||| ||||| Sbjct 4744452 TCTGGGATAAACTTCCTCCTGATCAGGAGCTTCTTTGCCAGCATCT-CAGCATCAGGCAG 4744394 Query 9826 CTTTGTTTTACCTGG 9840 ||| | |||||||| Sbjct 4744393 CTTCTTCTTACCTGG 4744379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||| ||| || | ||||||||| ||||| | || | ||||| || | | || ||| Sbjct 4744076 ACCTACGACTCCCATAGGAGTTGGGCAATCCTTGGGCAGAGGAGGAAGGGTGCGTGTGTA 4744017 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||| ||| | |||||||||||| || || ||||| | ||| | | || Sbjct 4744016 GTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTATAATCATAGTCTGTATTGAAAGTCGG 4743957 Query 10030 AGGGCTGTCAATCAAAT 10046 ||||||||||||| || Sbjct 4743956 GGGGCTGTCAATCAGAT 4743940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714796468331200