Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq77734 603 1e-167 seq62746 111 2e-19 seq142225 102 1e-16 seq89243 100 3e-16 >seq77734 Length=62899 Score = 603 bits (668), Expect = 1e-167 Identities = 1286/1907 (67%), Gaps = 39/1907 (2%) Strand=Plus/Minus Query 53132 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 53191 || ||||| || || || | ||||| ||||| || | ||||| || ||||| || || Sbjct 12084 AGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTG 12025 Query 53192 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 53251 || || || | ||| | ||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 12024 CTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGC 11965 Query 53252 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAG 53309 || || |||| ||| || || || || | ||| ||||| | || || || || || Sbjct 11964 ATGGGGGCCAACAACAAGCTGTTCCTTATACC--ATGTTTAGCTATCTTCTCCTTAAGCA 11907 Query 53310 GTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT 53369 ||| ||| | ||| || | |||||| || ||||| || | Sbjct 11906 GTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCT 11847 Query 53370 TACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAAC 53429 |||| | || ||| || || || || || || || || || |||| ||||| | Sbjct 11846 TACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGC 11787 Query 53430 TCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTT 53489 | | ||| || ||| | || || ||||| || ||||||| |||| || || |||| Sbjct 11786 TTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTT 11727 Query 53490 CCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAA 53549 | | || |||||||||||| | |||||| || || ||||| | || || ||||||| Sbjct 11726 CAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAA 11667 Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 | || ||||| || || | | || ||| | || || ||||||| || || || || | Sbjct 11666 TTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTA 11607 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTT---GACCA---CATCCTTCAGTT 53663 | || || || || ||||||||||| ||||||||||| ||| || ||| || Sbjct 11606 TGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTT---TT 11550 Query 53664 TGAGAAAATCAAATTGTCCAT-CTA---TTACAAACATGTTCAATGCAATAGATGCCAGA 53719 ||| | ||||| |||| | || ||||| ||||||| | ||||||||| |||| Sbjct 11549 TGA---AGTCAAAG-GTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAG 11494 Query 53720 TTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTAC 53777 ||||| || |||||||||| | || | | ||| | | ||||| ||||| | |||| Sbjct 11493 TTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCTCTGTGCACAAGTTAC 11436 Query 53778 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 | || |||||||| || ||||| || || |||||||| ||||||| ||||| || || | Sbjct 11435 TGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACA 11376 Query 53838 GAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAG 53897 ||| | || || || || || |||| || ||||| || || | ||| || ||| Sbjct 11375 ACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAG 11316 Query 53898 CCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAA 53955 |||| | || ||| |||| ||| | ||||| | || |||| ||||| Sbjct 11315 CCTTGACTACCCGTTTCA--CTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAA 11258 Query 53956 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 54015 ||| || |||||| | |||| ||||| || ||| || |||||||| ||||| || Sbjct 11257 CTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTC 11198 Query 54016 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGAT 54074 || | | ||| | ||||| || | |||||| ||||| || || ||| || || | Sbjct 11197 CTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGT 11139 Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134 ||| | || || ||||| || || || || || || | || ||||| | | | | Sbjct 11138 CTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGT 11079 Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194 || | ||||| || |||| ||| |||| | | || || ||||| || || || || | Sbjct 11078 CAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGT 11019 Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254 | | ||| | || ||||| ||||| || |||| |||||| | || ||||| || || Sbjct 11018 CCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTAC 10959 Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCC 54314 |||| || || | || ||||| || | | | ||| |||| || || ||| |||| Sbjct 10958 CATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCC 10899 Query 54315 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 54374 | ||||| ||| ||||| | ||| ||| |||| | || ||||| ||||| || || | Sbjct 10898 CTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGC 10839 Query 54375 TATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 54434 | |||||| ||||| ||||| || ||||| || | ||| | | | || || || | Sbjct 10838 TGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGGTGCCTGCGT 10779 Query 54435 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGA 54494 | || | || ||||| || || || ||||| || ||||| || || ||||| ||||| | Sbjct 10778 TGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAA 10719 Query 54495 TAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 54554 | || | ||| ||||| || || ||||| || || || | ||| | ||| || || | Sbjct 10718 TGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTG 10659 Query 54555 GTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAAC 54614 | | ||| | | || || |||||||||| |||||| || | |||||||| | Sbjct 10658 GACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGC 10599 Query 54615 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674 |||| | || || ||||| |||| || || || ||| | || ||||| || || | Sbjct 10598 CAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATTGAGGCGGTCTTTGT 10539 Query 54675 ATTTGTTA--ACTACATCCATGGTAATACTTG--AAATAATCGGAGAATGTTTCCCATTT 54730 ||| | || | ||| | ||| |||| | || || || || || | ||| Sbjct 10538 --TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGAGTGGCGCTTGTTT 10483 Query 54731 TTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCT 54790 ||| || |||||||| || | ||||| ||| || ||||| || | || || || ||| Sbjct 10482 AAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCT 10423 Query 54791 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTA 54850 || || || || || || || || | || || || | ||||||||| || || | || Sbjct 10422 TTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATCGGGGTGCTTAGTG 10363 Query 54851 GTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTA 54910 || ||||| || || || || | || ||||||||||| || || || |||||| | Sbjct 10362 GTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGTGGTCACTCCACTG 10303 Query 54911 TATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAG 54970 || | |||||||| |||||||| | |||| || || | | || | ||| | Sbjct 10302 TACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGC 10243 Query 54971 CCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 |||||||| | ||| || ||||| |||||||||||||||||||| Sbjct 10242 CCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 10196 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || ||||| ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq62746 Length=64918 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 62086 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | || | ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 62085 TCAGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACG 62026 Query 24277 CAATAAGTCTTTCTCC 24292 | | || |||||| || Sbjct 62025 CCACAATTCTTTCACC 62010 >seq142225 Length=5922 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| || || |||||||| ||||| ||||| || || || || |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 24277 C 24277 | Sbjct 3054 C 3054 >seq89243 Length=32234 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||||| || || ||||| || | ||||||||||| || ||||| || ||| | | Sbjct 16517 CATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCAT 16576 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 16577 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGAT 16636 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 || | |||||| || ||||| || | || || ||||| || || |||||||| || | Sbjct 16637 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGC 16696 Query 53568 TCTTATTAGA 53577 | | ||||| Sbjct 16697 GCATGTTAGA 16706 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||||||||||| || || || | |||||||| |||||||| || || ||| Sbjct 17037 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 17096 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| |||| || ||||| || || || ||| |||| || || || || |||| || Sbjct 17097 CTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTGAC 17156 Query 53870 TCTATAATCGCTTTCCA 53886 || ||||| || | ||| Sbjct 17157 TCAATAATGGCATACCA 17173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592563516333120