Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq69218 82.4 9e-11 >seq69218 Length=78875 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/140 (74%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 |||| |||||||||||||| || |||| | || || | || |||||| | | | Sbjct 37707 CCTGATGACCGAACTGGTTGCA-GGGAGCGCCCAGGATAACGAGCCCCTTGTCGGCGTAG 37649 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||| | || |||||||||||||| ||||| |||| ||| || ||||||||||||| || Sbjct 37648 CGCTGGTGGAGCTCGTTCATCTGGGTGTAATCCCTGACGGTTGTACCTCAGAGGGAAGCC 37589 Query 83510 ACGTTCTCGATGAGCAAGAC 83529 || || || || |||||| Sbjct 37588 ACATTTTCAAT---CAAGAC 37572 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 || || | ||| | || ||| ||||||||||||||||| | ||| || | |||||| || Sbjct 39393 CCATCTGGACCAATCAGGAATTTCTCGAAGTTCCAGGCGATGTCATTCCTGCACACAGGG 39334 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 |||| |||| | |||||| ||| || ||| | || || || || | || Sbjct 39333 CTCCAGATGATGAATTTAGGGTCGTTCATGATGGTGGACGGCTCATCACTGGGGGAAGGT 39274 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTGACCTCGCACTT 83304 || ||||| || | |||| | || ||||| ||||| ||||| || || ||| Sbjct 39273 AGTTTCTCTCTCAGATAAACGAACAAAGGGTGTGCGCCTTG-GCCGTTCACTTCCATCTT 39215 Query 83305 CTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGA 83361 ||| || ||| || ||||||| || || ||||| |||||||| | |||| ||| Sbjct 39214 CTCCAAAAGCTGGAACCTCGGCTCAAAACCTTTCCCCGGACGGACATATTTCAAGGA 39158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607609311401760