Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq130048 105 6e-18 >seq130048 Length=4274 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || || ||||| ||||| | || || || | ||||| ||||||||||| Sbjct 2407 GTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCG 2466 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | ||| |||||||| |||||| ||| Sbjct 2467 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTC 2526 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| |||| |||||| || | ||| ||||| || ||||| | || Sbjct 2527 ACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTACCGGTGAGGGTC 2586 Query 21159 TTGACAAATATTTGCATTTTG 21179 |||||||| |||||||| ||| Sbjct 2587 TTGACAAAGATTTGCATGTTG 2607 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||||| || |||| || ||||| ||||| Sbjct 2179 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGCTGCTTGCCG 2238 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || || | |||||||||||| |||||| ||| Sbjct 2239 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2298 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| || |||||||| || || | ||| Sbjct 2299 ACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 2358 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 2359 TTCACAAAGATCTGCAT 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421456153259504