Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq130048 132 5e-26 seq142225 129 6e-25 seq62746 111 2e-19 seq94371 87.8 2e-12 >seq130048 Length=4274 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || || ||| | Sbjct 2375 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 2316 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | ||||| || ||||| || | || ||| Sbjct 2315 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 2256 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 2255 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2196 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| || |||| ||||||| ||| Sbjct 2195 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 2148 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| || || || || ||||| || |||||||||||| | || || || || Sbjct 2606 AACATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCC 2547 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | ||||| | |||| || || | ||||| |||||||| ||| | || Sbjct 2546 AGTGACACTATTGAAAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGA 2488 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||||||||| || || | ||||| ||| |||||| Sbjct 2487 TCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTA 2428 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| || | || || || |||| ||||| | || || || Sbjct 2427 CAACATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2377 >seq142225 Length=5922 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| | ||||||||||| || || ||||| ||||||| || || |||||| Sbjct 3039 GGGGAGCGCGTCGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCC 3098 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||||| ||||| |||||||| ||||| ||| |||||||||| Sbjct 3099 GCCATTTTCTGGCTGAAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTC 3158 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 3159 ATCAGCAGAGACGAGG 3174 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 1438 GAGCCTCTGCTGAAGGAGAACCCACGGCGCTTCGTCATCTTCCCCATTCAGTACCACGAC 1497 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || ||| ||||||||| ||||||||||| || |||||||| | |||||||| Sbjct 1498 ATCTGGACCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 1550 Score = 105 bits (116), Expect = 7e-18 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 1743 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 1801 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1802 TTCATTTCTCACGTTTTGGCCTTTTTCGCCGCCAGCGACGGAATCGTCAACGAGAACCTG 1861 Query 116804 GT 116805 || Sbjct 1862 GT 1863 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||||||||||||| | ||||| ||||| |||||||| || || Sbjct 2112 GGTGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCTCGGTGTTTCTACGGGTTCCA 2171 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||||||| ||| Sbjct 2172 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGTCTGCTCATCGACACCTAC 2226 >seq62746 Length=64918 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| | || |||||| | |||| ||||||||||||||||| ||||| ||| Sbjct 60333 GAGCCACTGCTTCAAGAAAACCCCAGAAGGTTTGTGATTTTCCCCATACATTACCCTGAC 60392 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| |||||||| ||||| ||||||| |||||||| || ||||||||| Sbjct 60393 ATCTGGAAAATGTACAAGCAGGCCCAGGCGTCCTTCTGGACAGTGGAGGAGGTG 60446 >seq94371 Length=7202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | || ||||| || || |||| ||| |||||||||||||| |||| |||| Sbjct 3190 GGAATCCCCCCCGATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGACGGGCGC 3131 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || || |||||||||||||||||| Sbjct 3130 ACTCTGTCCGACTACAACATCCAGAA 3105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514214239189440