Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq89222 104 2e-17 >seq89222 Length=38626 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| |||||||||||| | |||| || | |||||| ||||| || ||||| || || Sbjct 34376 GTGATGTGGGCGATCATATATGTTAGAAGTGCATAGCTGGCAATATTGAAAGGTACTCCC 34435 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||| ||| | || | ||||| | ||| || || |||| ||||| |||||||| Sbjct 34436 AGACCCATGTCACCAGAGCGCTGATAAAGCTGGCAAGACAGCTCACCATCGCACACATAG 34495 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||||| | |||| || ||||||| ||||| Sbjct 34496 AACTGACAAAGAGCATGGCACGGGGGCAGAGCCAT 34530 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || ||||| ||||| || ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 34839 TACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCT 34898 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 | ||| || ||| ||| || | || | ||| ||||| ||||||||||| | | Sbjct 34899 CGGTCAGTAAACCCACCCTTGTCCAGGAAGTCACGAGAACCATTGGCATCCCAAATCTTC 34958 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCC 97559 || || ||| | ||||||||| | |||||||| Sbjct 34959 ACTCCTTTTGCAGAGAGCTCTTTGGCATTGGTAGATCC 34996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346124490957080