Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq130048 118 9e-22 seq94371 82.4 7e-11 >seq130048 Length=4274 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || ||||| || |||||||| ||| | |||||| |||||| Sbjct 2395 ACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCA 2454 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| || | ||||||||| || || ||||||||||||||| Sbjct 2455 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 2514 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | ||||| || ||| ||||| | ||| | ||||| Sbjct 2515 ATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTA 2574 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || ||||| || |||||| Sbjct 2575 CCGGTGAGGGTCTTGACAAAGATTTGCATG 2604 >seq94371 Length=7202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| ||| || ||||||| ||||| |||||||| || ||| ||| Sbjct 3103 CTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCCTCCAGCTGTTTGCCGGCGAAGA 3162 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | ||||||||||||||||| || || || Sbjct 3163 TCAGACGCTGCTGATCGGGGGGGATTCC 3190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433005347310448