Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq130048 113 3e-20 >seq130048 Length=4274 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||||||||| || ||| |||| || | ||||||||| || || Sbjct 2184 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCAAA 2243 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| |||||| || || | || |||||||| ||||| ||| | || Sbjct 2244 GATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 2303 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || |||| |||||||| || || ||||| |||||||| Sbjct 2304 TTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCAC 2363 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 2364 AAAGATCTGCAT 2375 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||||||||| || ||| | || || | ||| ||||| || || Sbjct 2412 TTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAA 2471 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| |||||| || ||| | || ||||||||| ||||| ||| | | Sbjct 2472 GATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTT 2531 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || || | ||||||||||| |||||||| || || || Sbjct 2532 TTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGAC 2591 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 2592 AAAGATTTGCAT 2603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322457586112640