Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq77734 289 3e-73 seq89243 120 3e-22 seq130048 86.0 6e-12 >seq77734 Length=62899 Score = 289 bits (320), Expect = 3e-73 Identities = 1029/1594 (65%), Gaps = 39/1594 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| || | |||| || |||| |||||| |||| || | |||||| Sbjct 12117 TCGTTCCACAGCCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAAC 12058 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | |||| ||| |||||| ||| | | ||||| || ||||| Sbjct 12057 TCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTA 11998 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || |||| ||| || || || || || || ||||| || ||||||| | ||| || Sbjct 11997 TTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTT 11938 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | || || || | || || ||| |||| ||||||||| || | || | || Sbjct 11937 ATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTCCAGTCCCAGAG--CAGA-GTCGGT 11881 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || || |||||||| ||||| |||| | ||| |||| | || ||| ||| || Sbjct 11880 ACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTC 11821 Query 22709 TCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATA 22768 || || || |||| | | | || | || ||||| | |||||| || | || || || Sbjct 11820 TCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATG 11761 Query 22769 GTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCG----ACG-CTTTCGTACGGCATAC 22823 ||||| ||||| || | | |||| || || | | | | ||||| | || || Sbjct 11760 GTCTCAAAGAT---CTGGAT--ATTCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAAC 11706 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTT-TC 22882 |||| | | ||| || || || | |||||| || || || || || || | || || Sbjct 11705 GCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCAATAGGCCTGTGGCGTC 11646 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 | || || | ||||| || | || || | || || || | |||| | | Sbjct 11645 TGTTT-GAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGG 11587 Query 22943 TTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 ||||| |||||| || || | | ||||| ||| | ||| | Sbjct 11586 TTTCTT---ACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAGTC--AAAGGTCCGTT 11532 Query 23000 -TGTACA-ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 || | ||| || |||||| || || || || | || || || || ||||| |||| Sbjct 11531 CTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACAGCTACCTCATCTT 11472 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 | || ||||| ||||| || || || | || || || || || ||||||||||| Sbjct 11471 GGCTTGTATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCT 11412 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||| || || | || || | ||| ||||| | |||||| || || || ||||| Sbjct 11411 GCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTG 11352 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGA--ACACGTCGCACGTACC 23234 ||| ||||| ||||| || ||||| ||||| | ||| || ||| ||| | Sbjct 11351 TCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACTACCCGTTTCAC---TC 11295 Query 23235 TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCA 23294 |||| || | |||||| ||||| | ||||| || | || |||| || ||| Sbjct 11294 TGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCA 11235 Query 23295 GGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCA 23354 | || || | | | || ||||| | | ||| || ||||| || | ||| Sbjct 11234 GCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCA 11175 Query 23355 TAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGC 23414 | || | ||| || |||||||| || ||||| || || || || | | ||||||||| | Sbjct 11174 TGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTAC 11115 Query 23415 CGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAA 23474 | ||||| || || || || | ||||| |||||||| ||||| ||||| ||||| | Sbjct 11114 CAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACA 11055 Query 23475 CGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGT 23534 |||||| || ||||||| |||||||| || || || |||||||| || |||||||| | Sbjct 11054 TGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTAT 10995 Query 23535 ACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAAC 23594 |||| || ||||| ||||| || || || || || | || || | || Sbjct 10994 ACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTAC 10935 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 || ||| || || | | ||| | ||| || ||||| | ||||| || || | | Sbjct 10934 CTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTG 10875 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGA 23714 | |||||||| || ||||| || ||||| || |||||||| || || | || | | || Sbjct 10874 CACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGA 10815 Query 23715 AACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCG 23774 | || || | || | | || || | || |||||| || || ||| || | Sbjct 10814 AGCAGCTGGAGAGCTGGGGTCTGTTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAG 10755 Query 23775 TAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 | || ||| ||| |||| || ||||| || || ||||| || ||||| || | Sbjct 10754 TGAA----CCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTT 10699 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 ||| || || | || || | ||| | ||| | ||| || | ||| || || Sbjct 10698 TTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCAGCCACTTTTCCA 10639 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAG 23950 || ||||| | ||| || || || | | |||||||| ||||| | | ||| ||| Sbjct 10638 TTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAGAAATTATAAGAAAAA 10579 Query 23951 TCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || | ||| | | ||| || ||||| | |||| Sbjct 10578 TCTCTATCATAGATTATAGCAGAATTGAGGCGGT 10545 >seq89243 Length=32234 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||||||||| || ||||| ||||| |||||| || ||||| | Sbjct 17477 TTTCCACACGCTTCATAAAAAGATCTGGGATCCACAGAGCAAAGAACAAATCTCGGGCTC 17536 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || ||||| || || || || | ||| || ||||| || ||||| Sbjct 17537 TCTGCTCCTCTTTACCAGTGTTTTTCTTTAAGTCAAGAAAATCAAACACATCAAAATGCC 17596 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | ||||||||||| || ||||| || || ||||||| Sbjct 17597 ATGGCTCGAGGTAGACCGCAAATGCCCCAGGTCTCT 17632 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| ||||| |||||||| || || || || ||||| | || || ||| Sbjct 17019 ACCTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTG 17078 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || ||||| |||||| || || | ||||| | ||| |||||||||||||| || || Sbjct 17079 CCTAAATTCTGCTGGTTACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTC 17138 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||||| ||| ||||| || || || ||||| Sbjct 17139 CCCGTCTCGGTCTGTGACTCAATAATGGCATACCACA 17175 >seq130048 Length=4274 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| || || ||||| || || || ||||| |||||| | || ||||| || Sbjct 2606 AACATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCC 2547 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | | |||| || || | || |||||||| ||| | || || || Sbjct 2546 AGTGACACTATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAT 2487 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||||||| | || || ||| | ||| || Sbjct 2486 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTAC 2427 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || ||||| | || || | || || || |||| Sbjct 2426 AACATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCGCCTCAGAGGTGGTA 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444896910348480