Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq77734 637 6e-178 seq89243 109 7e-19 seq142225 105 8e-18 >seq77734 Length=62899 Score = 637 bits (706), Expect = 6e-178 Identities = 1290/1904 (68%), Gaps = 33/1904 (2%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || ||||| ||||| || | || || ||||| || | ||||| || ||||| || || Sbjct 12084 AGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTG 12025 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || || || | ||| | ||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 12024 CTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGC 11965 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAT 62547 || || |||| ||| || || || || | ||| ||||| | || || || || || Sbjct 11964 ATGGGGGCCAACAACAAGCTGTTCCTTATACC--ATGTTTAGCTATCTTCTCCTTAAGCA 11907 Query 62548 GTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGT 62607 ||| ||| | ||| || | |||||| || || ||||| || | Sbjct 11906 GTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCT 11847 Query 62608 TACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAAC 62667 |||| | || ||| || || ||||| || || || || || |||| | ||| | Sbjct 11846 TACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGC 11787 Query 62668 TCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTT 62727 | | ||| || ||| | || || ||||| |||||||||| |||| || || |||| Sbjct 11786 TTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTT 11727 Query 62728 CCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAA 62787 | || || |||||||||||| | |||||| || || || || | || || ||||||| Sbjct 11726 CAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAA 11667 Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 | || ||||| || || | | || ||| | || || ||||||| || || || || | Sbjct 11666 TTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAACTGGGTAGTAGTTTA 11607 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA---CATCCTTCAGTT 62901 | || || || || ||||| ||||| ||||||||||| ||| || ||| || Sbjct 11606 TGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTT---TT 11550 Query 62902 TGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||| | ||||| || ||| ||||| ||||||| | ||||| ||| |||| | Sbjct 11549 TGA---AGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGT 11493 Query 62959 TACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 63016 ||||||| |||||||||| | || | | ||| | | ||||| ||||| | ||||| Sbjct 11492 TACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCTCTGTGCACAAGTTACT 11435 Query 63017 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63076 || ||||| || || ||||| || || |||||||| ||||||| ||||| || || | Sbjct 11434 GCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAA 11375 Query 63077 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 63136 ||| | ||||| || || || ||||||| ||||| || || | ||| || |||| Sbjct 11374 CATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGC 11315 Query 63137 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTC 63196 ||| | || ||| ||| | || ||||| | || |||| || ||||| Sbjct 11314 CTTGACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTC 11255 Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256 || |||||| | |||| | ||| || ||| || |||||||| ||||| || Sbjct 11254 CTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTG 11195 Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 63315 || | | ||| | ||||| || | |||||| ||||| || || ||| || || |||| Sbjct 11194 GTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTCTC 11136 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 || || || ||||| || || || || || || | || ||||| | | | ||| Sbjct 11135 GTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAA 11076 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 | ||||| || |||| ||| ||||| | | || || ||||| || || || || || | Sbjct 11075 AGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCA 11016 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 ||| | || ||||| ||||| || |||| |||||| | || || ||||| |||||| Sbjct 11015 CGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCAT 10956 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63555 | || || | || |||| || | | | ||| |||| || || ||| || || | Sbjct 10955 TTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTC 10896 Query 63556 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTAT 63615 |||| ||| ||||| | ||| ||| |||| | |||||||| |||||||| ||||| | Sbjct 10895 CTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGT 10836 Query 63616 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAA 63675 |||| ||||| ||||| || ||||| || | ||| | | | || || || || | Sbjct 10835 CATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTGGTGCCTGCGTTGA 10776 Query 63676 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 | | || ||||| || || || ||||| || ||||| || || ||||| |||||||| | Sbjct 10775 ACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGG 10716 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 | | ||| ||||| || || ||||| || || || | ||| | ||| || || || | Sbjct 10715 CCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGAC 10656 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 ||| | | ||| || ||||||| || |||||| || | |||||||| |||| Sbjct 10655 GCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAA 10596 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | | || || ||||| |||| || || || ||| | |||||||| || || | | Sbjct 10595 AGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATTGAGGCGGTCTTTGT--T 10538 Query 63916 TGTTA--ACTATATCCATGGTAATACTTG--AAATAATCGGAGAATGTTTCCCATTTTTA 63971 || | || ||||| | ||| |||| | || || || || || | ||| | Sbjct 10537 TGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGAGTGGCGCTTGTTTAAA 10480 Query 63972 GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTG 64031 || |||||||||||||| | ||||||||| || ||||| || | || || || || || Sbjct 10479 GGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCTTTA 10420 Query 64032 TGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 64091 || || || || | || || | || || || | ||||||||| || || | || || Sbjct 10419 TGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATCGGGGTGCTTAGTGGTC 10360 Query 64092 CAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 64151 ||||| || || || || || || ||||||||||| || || || |||||| | || Sbjct 10359 AGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGTGGTCACTCCACTGTAC 10300 Query 64152 ATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCA 64211 | ||||| || |||||||| | |||| || || | | |||| ||| | ||| Sbjct 10299 AGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCA 10240 Query 64212 TAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 || || | ||| || ||||| |||||||||||||||||||| Sbjct 10239 TAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 10196 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || ||||| ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq89243 Length=32234 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||||| ||||| ||||| || | ||||||||| | || ||||| || ||| | | Sbjct 16517 CATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCAT 16576 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| |||| | || |||| || || || || |||||||||| Sbjct 16577 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGAT 16636 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || | |||||| || |||||||| | || || ||||| || || |||||||| || | Sbjct 16637 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGC 16696 Query 62806 TCTTATTAGA 62815 | | ||||| Sbjct 16697 GCATGTTAGA 16706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || ||||||||||| || || || | ||||| || |||||||| || || ||| Sbjct 17037 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 17096 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| |||| || ||||| || || || ||| |||| || || || || |||| || Sbjct 17097 CTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTGAC 17156 Query 63108 TCTATAATCGCTTTCCA 63124 || ||||| || | ||| Sbjct 17157 TCAATAATGGCATACCA 17173 >seq142225 Length=5922 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| ||||| || ||||||||||| || || ||||| |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 33724 C 33724 | Sbjct 3054 C 3054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628589109280320