Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq77734 269 2e-67 seq62746 104 2e-17 seq142225 95.1 1e-14 >seq77734 Length=62899 Score = 269 bits (298), Expect = 2e-67 Identities = 983/1521 (65%), Gaps = 17/1521 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || ||||| ||||| | |||||| ||||| || | ||||| | ||| || || |||||| Sbjct 12081 AGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTA 12022 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||||||||||| |||||||| | ||| || ||||||||||| Sbjct 12021 GTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATG 11962 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | | | ||| || || | |||||| || || ||| || || ||| Sbjct 11961 GGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTC 11902 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | || || ||| |||||| || || || ||||| || |||||| Sbjct 11901 CAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTACTC 11842 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 |||||||| | || ||||||||||| || | ||| |||| || || || || Sbjct 11841 ACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTCTGCTAACTCACAGCTTGAC 11782 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || | || ||||| || || || || || || || ||||| | | | ||||| Sbjct 11781 TCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGA 11722 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || || |||| ||| | || | || || |||| || | |||||| ||||| || || Sbjct 11721 CTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCA 11662 Query 37543 ATGGGTCTAT-GTTTCT-TATTAGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 || || || | | ||| | | || ||| || ||| ||||| || || || || | Sbjct 11661 ATAGGCCTGTGGCGTCTGTTTGAGTTCT--CCGCCTCTGGAACTGGGTAGTAGTTTATGT 11604 Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA-- 37658 | || || || || || ||| | || | || ||| || | | | ||| | ||| Sbjct 11603 CAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGAGGCAAGCTTTTTGAAGT 11544 Query 37659 CATAAATACGTTAT-TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAG 37717 || | | |||| | | | ||| | | | | | |||||| | | ||||| |||| Sbjct 11543 CAAAGGTCCGTTCTGGAGTTACATACATGTTGAGTGCAATAGAAGCCAAGTTACACACAG 11484 Query 37718 CAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTG 37777 | || ||||||| | | || | | | ||||||||| || | ||||| || | || | Sbjct 11483 CTACCTCATCTTGGCTTGTATACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGG 11424 Query 37778 TTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCG 37837 | |||||||| || || || | ||||| | |||||| || | || || || | Sbjct 11423 TGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAG 11364 Query 37838 TTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATC 37896 ||||| ||| | |||| ||| || || | | ||| | || || || || || | | Sbjct 11363 TTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCA-CACCTGCTGAGCCTTGACTACC 11305 Query 37897 GCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCAT 37956 ||| | | | || ||||| | || | || | ||| || | |||||| Sbjct 11304 CGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCCCA- 11246 Query 37957 ACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTT 38014 ||| | ||| | || || || || | || ||||| | |||||| || | | |||| Sbjct 11245 ACA-CTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTT 11187 Query 38015 CTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTAT 38074 | || | | ||| || |||||||| | ||||| ||| || | ||| | || | Sbjct 11186 CCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCT 11127 Query 38075 ATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCAT 38133 || || || || | | |||||| | || || || || || | ||| ||||||| Sbjct 11126 GCTCCTCTTTACC-AGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCAT 11068 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 || || | || || | | || || |||| ||||| || || || | | || | Sbjct 11067 GGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAACGT 11008 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 ||||||| ||||| | || | ||| || || | ||||| || || || ||| | || Sbjct 11007 GCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCT 10948 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 | || || |||| | | || || || | | | || || || |||||| | Sbjct 10947 GCAATGTAGCTACCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGAT 10888 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 ||||| || | || |||||||| | || ||| | || ||||| || ||||||||||| Sbjct 10887 TTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAAATGCCTTCAATGCTGTCATCCTTC 10828 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGT 38432 || | |||| || || || || | || || | | | || || ||||| || | || Sbjct 10827 ATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTGTTG-GTGCCTGCGTTGAACAGAGT 10769 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 ||||| ||||| ||||||| || || |||| || || || || || | | || Sbjct 10768 GGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCCGCGTC 10709 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552 |||||| ||| || || | || ||| ||||| |||||||||||||| | || Sbjct 10708 AATATCAGTTTTGTGGATTCCAACAGCTACTCTCATGAGCATATGTTGTGGACGCTCAGC 10649 Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 | ||| ||| ||| || || || || |||| ||||| | ||||| || | Sbjct 10648 CACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCTAGGGTTTTAAAGCCAAAGAAATT 10589 Query 38613 ATATGAATAATCTCTATCGTA 38633 ||| ||| |||||||||| || Sbjct 10588 ATAAGAAAAATCTCTATCATA 10568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || ||||| ||||| ||||||||||| |||| | || | | |||| || Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 | | || || || || || || | ||||| | ||| || ||||| | || ||| | Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 | |||||||| |||||||| |||||||| | ||||||| || |||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq62746 Length=64918 Score = 104 bits (114), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| ||| | || | || ||||| | || | | Sbjct 62147 AACCT-CATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCT 62089 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 |||| | |||| | ||||||||||| || ||||| ||||| |||||||| |||||||||| Sbjct 62088 TTTTCAGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAA 62029 Query 11769 ATGCTACTACTCTTTCTCC 11787 | || || | |||||| || Sbjct 62028 ACGCCACAATTCTTTCACC 62010 >seq142225 Length=5922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | ||||||||||| |||||||| || Sbjct 3172 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCTTC 3113 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || || ||||| ||||| |||||||||||||| || || || Sbjct 3112 AGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGGCC 3053 Query 11774 ACTAC 11778 || || Sbjct 3052 ACGAC 3048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467610918951360