Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq77734 610 9e-170 seq62746 105 9e-18 seq142225 102 1e-16 seq89243 100 4e-16 >seq77734 Length=62899 Score = 610 bits (676), Expect = 9e-170 Identities = 1331/1982 (67%), Gaps = 37/1982 (2%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| ||||||||| | || || | | ||||||| || || || ||||| | | Sbjct 12160 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCGTTCCACAGCCCCCG 12101 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 12100 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCT 12041 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || || || || | ||| | ||||||||||| ||||| ||||| || Sbjct 12040 GCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGC 11981 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 65324 || || ||||| ||||| || |||| ||| || || || || | ||| ||||| | Sbjct 11980 TGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACC--ATGTTTAGCT 11923 Query 65325 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNN 65384 || || || || || ||| ||| | ||| || | |||||| Sbjct 11922 ATCTTCTCCTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCG 11863 Query 65385 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 || ||||| || ||||| | || ||| || || || || || || || || Sbjct 11862 TACTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTT 11803 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 || |||| ||||| || | ||| || ||| | || || ||||| || ||||||| || Sbjct 11802 TCTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATA 11743 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || ||||| | || |||||||||||| | |||||| || || ||||| Sbjct 11742 TTCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCG 11683 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | || || |||||||| || ||||| || || | | || ||| | || || |||||| Sbjct 11682 AGACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGA 11623 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACC 65681 | || || || || || || || || || ||||| ||||| ||||||||||| ||| Sbjct 11622 ACTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACT 11563 Query 65682 A---CATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAAT 65735 || ||| ||||| | ||||| | ||| ||||| ||||||| | | Sbjct 11562 GAGGCAAGCTT---TTTGA---AGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGT 11509 Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCT 65793 |||| ||| |||| ||||| || |||||||||| | || | | ||| | | |||| Sbjct 11508 GCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCT 11451 Query 65794 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 65853 | ||||| | ||||| || |||||||| || ||||| || || |||||||| |||||| Sbjct 11450 CTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTAC 11391 Query 65854 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 65913 | ||||| || || | ||| | ||||| || || || ||||||| ||||| || || | Sbjct 11390 AGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCAT 11331 Query 65914 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGT 65971 ||| || ||||||| | || ||| |||| ||| | ||||| | || Sbjct 11330 ACCACACCTGCTGAGCCTTGACTACCCGTTTCA--CTCTGCCCTCCTGCTCGTAGCGCGT 11273 Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 |||| || ||||| || |||||| | |||| ||||| || ||| || || Sbjct 11272 GTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCA 11213 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||||| ||||| || || | | ||| | ||||| || | |||||| ||||| || Sbjct 11212 CATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAG 11153 Query 66092 AGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 || ||| || | |||| | || || ||||| || || || || || || | || | Sbjct 11152 GGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAA 11094 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 |||| | | | ||| | ||||| || |||| ||| ||||| | | || || |||| Sbjct 11093 GGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTT 11034 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270 | || || || || || | ||| | || ||||| ||||| || |||| |||||| | || Sbjct 11033 TATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAA 10974 Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA 66330 ||||| || ||||||| || || | || ||||| || ||| | ||| |||| Sbjct 10973 GGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAA 10914 Query 66331 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 66390 || || ||| || || ||||| ||| ||||| | ||| ||| |||| | || |||| Sbjct 10913 CTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCAT 10854 Query 66391 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 66450 | ||||| || || || |||||| ||||| ||||| || ||||| || | ||| | | Sbjct 10853 AAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTC 10794 Query 66451 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 66510 | || || || || || | || ||||| || || || ||||| || ||||| || | Sbjct 10793 TGTTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCA 10734 Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 66570 | ||||| |||||||| || | ||| ||||| || || ||||| || || || | || Sbjct 10733 GGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCA 10674 Query 66571 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 66630 | | ||| || || || | ||| | | || || ||||||| || |||||| | Sbjct 10673 TGAGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCT 10614 Query 66631 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 | | |||||||| ||||| | || || ||||| |||| || || || ||| | || | Sbjct 10613 CTAGGGTTTTAAAGCCAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAAT 10554 Query 66691 TGAGTTTATCCTTATATTTGTTA--ACTACATCCATGGTAATACTTG--AAATAATCGGA 66746 |||| || || | ||| | || | ||| | ||| |||| | || || || Sbjct 10553 TGAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGG 10498 Query 66747 GAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 66806 || || | ||| ||| || ||||||||||| | ||||||||| || ||||| || Sbjct 10497 GAGTGGCGCTTGTTTAAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAAC 10438 Query 66807 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAA 66866 | || || || ||||| || || || || || || || | || || | | ||||||| Sbjct 10437 ACCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAA 10378 Query 66867 TCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACC 66926 || || || | || || ||||| || || || || || || ||||||||||| || Sbjct 10377 TCGGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACA 10318 Query 66927 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 66986 || || |||||| | || | |||||||| |||||||| | |||| || || | | Sbjct 10317 GTGGTCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACA 10258 Query 66987 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATG 67046 || | ||| | |||||||| | ||| || ||||| |||||||||||||||||| Sbjct 10257 AACTCCGCGTTGAGCCCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATG 10198 Query 67047 AC 67048 || Sbjct 10197 AC 10196 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || ||||| ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq62746 Length=64918 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 62086 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||| | || | ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 62085 TCAGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACG 62026 Query 36300 CAATAAGTCTCTCTCC 36315 | | || ||| || || Sbjct 62025 CCACAATTCTTTCACC 62010 >seq142225 Length=5922 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || |||||||| ||||| ||||| || || || || |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 36300 C 36300 | Sbjct 3054 C 3054 >seq89243 Length=32234 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||||| || || ||||| || | ||||||||||| || ||||| || ||| | | Sbjct 16517 CATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCAT 16576 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 16577 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGAT 16636 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 || | |||||| || ||||| || | || || ||||| || || |||||||| || | Sbjct 16637 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGC 16696 Query 65599 TCTTATTAGA 65608 | | ||||| Sbjct 16697 GCATGTTAGA 16706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| || ||||||||||| || || || | |||||||| |||||||| || || ||| Sbjct 17037 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 17096 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| |||| || ||||| || || || ||| |||| || || || || |||| || Sbjct 17097 CTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTGAC 17156 Query 65901 TCTATAATCGCTTTCCA 65917 || ||||| || | ||| Sbjct 17157 TCAATAATGGCATACCA 17173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656889001044960