Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq68638 165 6e-36 seq142225 84.2 2e-11 >seq68638 Length=33057 Score = 165 bits (182), Expect = 6e-36 Identities = 231/323 (72%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 |||||||| |||| ||||| |||||||||| | |||| |||| |||||| | | | Sbjct 4224 CATTTCCCACTCTTCTCCTGTAAAGAGGACTGCGACATTATCACGGACACGGCCTCTAAG 4283 Query 91859 CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTG 91918 ||||| | ||||||||||||||||||||| |||| || |||||||| || ||| ||| Sbjct 4284 CTGGAGCGTAGTGGCTTCTACTGGGGTCCTCTGGGTGTGGAGGAGGCTCACCGT---CTG 4340 Query 91919 CGCAACTCGG---CACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTG 91975 | ||| || | |||||||| || | || || || || | || ||| |||| || Sbjct 4341 CTCAAAGAGGCTCCTCTGGGCAGTTTCATGATCCGAGACAGTCGTCAGAAGAACGTGTTC 4400 Query 91976 TTCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGAC 92035 ||||| |||| || ||||| || ||| || || |||||| | ||||| |||||| | Sbjct 4401 TTCACTTTGTCCTACCACTCCAAGAGCGGCCCAGTAAGTGTGCGCATTGAGTACAAGAAG 4460 Query 92036 AAGCAATTTTCCTTGGCTGGGAGCAAACAGAGGTTTTCATCGGTCCTTCTCCTGTTGGAC 92095 ||| || ||||||||||| | | | | || | ||| || || ||||| || Sbjct 4461 CAGCGCTTCTCCTTGGCTGGAAACGAGCGCTCCTTCCCTTCGCTCTTTGCTCTGTTAGAA 4520 Query 92096 CATTACATCGGTGGGCCCAATAA 92118 ||||||||| | |||||| || Sbjct 4521 CATTACATCAGCTCGCCCAAGAA 4543 >seq142225 Length=5922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 22745 TCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCT 22804 || ||||||| || ||||| || || || | || ||||| || || || ||||| |||| Sbjct 3049 TCGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCT 3108 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 ||||||||||||| || ||||| || || | || ||||||||| | || ||| | | Sbjct 3109 GGCTGAAGAAACGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAG 3168 Query 22865 ACGA 22868 |||| Sbjct 3169 ACGA 3172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355556119837732