Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq77734 614 8e-171 seq89243 109 8e-19 seq142225 107 3e-18 >seq77734 Length=62899 Score = 614 bits (680), Expect = 8e-171 Identities = 1337/1982 (67%), Gaps = 37/1982 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || | | ||||||| || || || ||||| | | Sbjct 12160 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCGTTCCACAGCCCCCG 12101 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 12100 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCT 12041 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || || || || | ||| | || |||||||| ||||| ||||| || Sbjct 12040 GCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGC 11981 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATG-ATCTGA 79204 || || || || ||||| || |||| ||| || || || || | ||| | | | || | Sbjct 11980 TGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCT-A 11922 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 | || || || || || ||| ||||| || || ||| || | ||| | || | Sbjct 11921 TCTTCTCCTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGT 11862 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || ||||| || ||||| | || |||| ||| || |||||||| || || |||| Sbjct 11861 ACTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTT 11802 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | ||||| ||||| || | ||| || || | || || ||||| || || |||| ||| Sbjct 11801 CTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATAT 11742 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | || || ||||| | || |||||||||||| | |||||| || || ||||| | Sbjct 11741 TCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGA 11682 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 || || |||||||| || ||||| || || | | || || | || || ||||||| Sbjct 11681 GACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAA 11622 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTT---GACCA 79561 || || || || || || || || || ||||| || || || |||||||| ||| Sbjct 11621 CTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTG 11562 Query 79562 ---CATCCTTTAGTTTGAGAAAATCAAATCGTCCAT-CTA---TTACAAACATGTTCAAC 79614 || |||| |||| | ||||| |||| | || ||||| ||||||| | Sbjct 11561 AGGCAAGCTTT---TTGA---AGTCAAAG-GTCCGTTCTGGAGTTACATACATGTTGAGT 11509 Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTT 79672 || | ||| |||| ||||| || |||||||||| | || | | ||| | | || | Sbjct 11508 GCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCT 11451 Query 79673 CAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 79732 | ||||| | |||||| || || ||||| || ||||| || || |||||||| |||||| Sbjct 11450 CTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTAC 11391 Query 79733 ACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 79792 | ||||| || || | ||| | ||||| || || || ||||||| ||||| || || | Sbjct 11390 AGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCAT 11331 Query 79793 TCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT--TCGTATTGTGT 79850 ||| || ||||||| | || | | | |||| ||| | ||||| | || Sbjct 11330 ACCACACCTGCTGAGCCTTGACTACC--CGTTTCACTCTGCCCTCCTGCTCGTAGCGCGT 11273 Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 || | || ||||| || |||||| || || | ||||| || || || || Sbjct 11272 GTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCA 11213 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 |||||| ||||| || | | | || | ||||| || | |||||| ||||| || Sbjct 11212 CATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAG 11153 Query 79971 AGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029 || ||| || || |||| | || |||||||| || || || || || || | || | Sbjct 11152 GGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAA 11094 Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089 |||| | | | ||| | ||||| || |||| ||| ||||| | | |||||||||| Sbjct 11093 GGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTT 11034 Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 80149 | || || || || || | ||| | || ||||| ||||| || |||| |||||| | || Sbjct 11033 TATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAA 10974 Query 80150 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 80209 ||||| || ||||||| || || | || ||||| || | | | ||| |||| Sbjct 10973 GGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAA 10914 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 || || ||| || || ||||| ||| ||||| | ||| ||| |||| | || |||| Sbjct 10913 CTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCAT 10854 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 | ||||| || ||||| ||||| ||||| ||||| || ||||| || | ||| | | Sbjct 10853 AAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTC 10794 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 | || || || || || | || ||||| || || || ||||| || |||||||| | Sbjct 10793 TGTTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCA 10734 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCA 80449 | ||||| |||||||| || | || ||||| || || ||||| || || || | || Sbjct 10733 GGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCA 10674 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | ||| || || || | ||| | | || ||| ||||||| || ||| || | Sbjct 10673 TGAGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCT 10614 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 | | |||||||| ||||| | || || ||||| |||| || || || ||| | || | Sbjct 10613 CTAGGGTTTTAAAGCCAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAAT 10554 Query 80570 TGAGTTTATCCTTATATTTGTTA--ACTACATCCATGGTGATACTT--GAAATAATCGGA 80625 |||| || | | |||| | || | ||| | ||| ||| || || || || Sbjct 10553 TGAGGCGGTC--TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGG 10498 Query 80626 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 80685 || || | ||| ||| |||||||||||||| | ||||||||| || ||||| || Sbjct 10497 GAGTGGCGCTTGTTTAAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAAC 10438 Query 80686 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAA 80745 | || || || || || || || || || || || || | || || | | ||||||| Sbjct 10437 ACCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAA 10378 Query 80746 TCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACC 80805 || || || | || || ||||| || || || || || || ||||||||||| || Sbjct 10377 TCGGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACA 10318 Query 80806 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 80865 || || |||||| | || | |||||||| |||||||| | |||| || || | | Sbjct 10317 GTGGTCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACA 10258 Query 80866 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATG 80925 || | ||| | |||||||| | ||| || ||||| |||||||||||||||||| Sbjct 10257 AACTCCGCGTTGAGCCCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATG 10198 Query 80926 AC 80927 || Sbjct 10197 AC 10196 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || || || ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq89243 Length=32234 Score = 109 bits (120), Expect = 8e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||| |||||||||||| || | | |||| |||| || ||||| || || | ||| Sbjct 16519 TATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCATAA 16578 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||| || ||||||| | ||||||| || || ||| || |||||||||||| Sbjct 16579 TAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGATAA 16638 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | |||||| || ||||| || | || || ||||| || || |||||||| || | | Sbjct 16639 CGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGCGC 16698 Query 79480 TTATTAGA 79487 | ||||| Sbjct 16699 ATGTTAGA 16706 >seq142225 Length=5922 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 50102 CAAC 50105 | || Sbjct 3054 CCAC 3051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716867780792160