Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq77734 609 3e-169 seq89243 113 6e-20 seq142225 96.9 5e-15 >seq77734 Length=62899 Score = 609 bits (674), Expect = 3e-169 Identities = 1337/1997 (67%), Gaps = 33/1997 (2%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | ||||| | | |||| || || || || ||||| | | Sbjct 12160 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCGTTCCACAGCCCCCG 12101 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 12100 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCT 12041 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || || || || | ||| | ||||||||||| ||||| ||||| || Sbjct 12040 GCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGC 11981 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || ||||| ||||| || |||| ||| | || || || | ||||||| || Sbjct 11980 TGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTAT 11921 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNN 71348 || || || || || ||| | ||| || | ||||| Sbjct 11920 CTTCTCCTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCGTA 11861 Query 71349 NNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTC 71408 ||||| ||||| | || |||| || || || || || || |||||||| Sbjct 11860 CTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTTTC 11801 Query 71409 GGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468 |||| ||||| || | ||| || || |||| || ||||| || || |||| |||| Sbjct 11800 TGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 11741 Query 71469 GAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 71528 || || ||||| || || |||||||||||| | |||||| || || ||||| | Sbjct 11740 CAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCGAG 11681 Query 71529 TCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 71588 || || || ||||| || ||||| ||||| | | || || | || || ||||||| Sbjct 11680 ACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGAAC 11621 Query 71589 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTT---GACCA- 71644 || || || || || || || || || ||||| ||||| || |||||||| ||| Sbjct 11620 TGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACTGA 11561 Query 71645 --CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGC 71699 || |||| |||| | ||||| ||| ||| ||||| ||| ||| | || Sbjct 11560 GGCAAGCTTT---TTGA---AGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGTGC 11507 Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCA 71757 || ||| |||| ||||| || |||||||||| | || | | ||| | | ||| || Sbjct 11506 AATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCTCT 11449 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 ||||| | ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 11448 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 11389 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 ||||| || || | || | ||||| || || || ||||||| ||||| || || | | Sbjct 11388 GCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATAC 11329 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTAT 71935 || || ||||||| | || | | | |||| ||| | ||||| | || | Sbjct 11328 CACACCTGCTGAGCCTTGACTACC--CGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGT 11271 Query 71936 ATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACA 71995 | | || ||||| || |||||| | || | ||||| || ||| | || |||| Sbjct 11270 ACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACA 11211 Query 71996 TCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 |||| ||||| || | | | || | ||||| || | |||||| ||||| || | Sbjct 11210 TCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGG 11151 Query 72056 CTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 | ||| || || |||| | || |||||||| || || || || || || | || ||| Sbjct 11150 C-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGG 11092 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | ||| | ||||| || |||| ||| ||||| | | ||||| ||||| Sbjct 11091 AAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTA 11032 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || || || | ||| | || ||||| ||||| || |||| |||||| | || Sbjct 11031 TTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGG 10972 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 ||||| || |||||| || || | || ||||| || | | | ||| ||||| | Sbjct 10971 CCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACT 10912 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || ||| || || ||||| ||| ||||| | ||| ||| |||| | || ||||| Sbjct 10911 GCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAA 10852 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 ||||| || || || |||||| ||||| ||||| || ||||| || | ||| | | Sbjct 10851 ATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTG 10792 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 | || || || || || | || ||||| || || || ||||| || |||||||| || Sbjct 10791 TTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGG 10732 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATT 72534 ||||| |||||||| || | || ||||| || || ||||| || || || | ||| Sbjct 10731 TTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATG 10672 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | |||||| || || | ||| | | || ||| ||||||| || |||||| || Sbjct 10671 AGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCT 10612 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 | |||||||| ||||| | || || ||||| |||| || || || ||| | |||||| Sbjct 10611 AGGGTTTTAAAGCCAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATTG 10552 Query 72655 AGTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGAGA 72710 || || || | ||| | || ||||| | ||| |||| | || || || || Sbjct 10551 AGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGA 10496 Query 72711 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 72770 || | ||| ||| |||||||||||||| | ||||||||| || ||||| || | Sbjct 10495 GTGGCGCTTGTTTAAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAACAC 10436 Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 || || || || || || || || || || || || | || || || | ||||||||| Sbjct 10435 CTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATC 10376 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 || || | || || ||||| || || ||||| || || ||||||||||| || || Sbjct 10375 GGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGT 10316 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 72950 || |||||| | || | |||||||| |||||||| | |||| || || | | Sbjct 10315 GGTCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAA 10256 Query 72951 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010 || | ||| | |||||||| | ||| || ||||| ||||||||||||||||| || Sbjct 10255 CTCCGCGTTGAGCCCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 10196 Query 73011 ATTTTCCCGGCATCCAT 73027 ||| ||| ||||| Sbjct 10195 GCGCTCCTGGCGTCCAT 10179 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq89243 Length=32234 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || || ||||||| || || ||||| |||| | ||||||||| || ||||| || Sbjct 16510 GAACCAGCATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAG 16569 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||||| || ||||||| | ||||||| || || || || ||| Sbjct 16570 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCA 16629 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||||||| | |||||| || ||||| || | || || || || || || |||||| Sbjct 16630 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGT 16689 Query 71554 CTGTGTCTCTTATTAGA 71570 ||||| | | | ||||| Sbjct 16690 CTGTGGCGCATGTTAGA 16706 >seq142225 Length=5922 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || |||||||| ||||||||||| || || || || |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 42207 C 42207 | Sbjct 3054 C 3054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669830109433440