Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq77734 178 2e-39 >seq77734 Length=62899 Score = 178 bits (196), Expect = 2e-39 Identities = 356/522 (68%), Gaps = 18/522 (3%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 |||||| || || | | |||||| ||||||||||| || |||| || | |||| Sbjct 10951 AACAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGGTGTATAACAACACAGCACG 11010 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| || || ||||||||||| || || || | ||| | ||| |||| || || Sbjct 11011 TTACGTGGACCAAGGTGGCAATAAACGACCGGGTGCCTTTGCCATGTACCTGGAGCCATG 11070 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG--GCA 96983 |||| ||||| |||||||| | ||| | |||||| |||| | ||||| ||| Sbjct 11071 GCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAAAACACTGG---TAAAGAGGAGCA 11127 Query 96984 -CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--- 97039 | || | ||| | || ||||| || ||| | || ||||||||||||||| | || Sbjct 11128 GAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGTTCATGAAGAGGGTGGA 11187 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 ||| || | ||||| | ||||||||| || || || ||| || || Sbjct 11188 AAACAACCAGG---ACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTGGGCTGGATGAGTG 11244 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG 97159 ||||| || ||||||||| ||||||| ||||||||| |||||| || |||| Sbjct 11245 TTGGGGGGAGGAGTTTGAGAAGCTGTACACGCGCTACGAGCAGGAGGGCAGA---GTGAA 11301 Query 97160 ACG---AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 ||| |||| | || | | ||||| | |||||| | | ||||| |||||| || Sbjct 11302 ACGGGTAGTCAAGGCTCAGCAGGTGTGGTATGCCATCATAGAGTCTCAGACAGAGACAGG 11361 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 |||||| ||||| | ||||| ||| || || | || || ||||| | | ||||| Sbjct 11362 AACTCCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGGG 11421 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 ||||||||| || || ||||||| || ||||| ||||| Sbjct 11422 CACCATCAAATGCAGTAACTTGTGCACAGAGATTGTGGAGTA 11463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739613726977440