Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq130048 170 4e-37 seq113693 91.5 3e-13 seq88123 91.5 3e-13 >seq130048 Length=4274 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || || ||||| || || || | |||||| Sbjct 2164 AGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 2223 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || |||||||| ||||| ||||| || ||||| || ||| Sbjct 2224 TCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCC 2283 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | ||| ||||| || || ||||| || || || ||| Sbjct 2284 TGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 2343 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| |||||||| Sbjct 2344 TTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || |||| || | || ||||||||||| || || ||||| Sbjct 2374 ATACCACCTCTGAGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCG 2433 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || || ||||| || ||||| || |||||||| ||||| || Sbjct 2434 GAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGG 2493 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || ||||| || || || ||||| | || || || || || Sbjct 2494 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCA 2553 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || ||||| || || || || ||||| || ||||| ||| Sbjct 2554 ACCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATGTTG 2607 >seq113693 Length=57424 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| || |||||||||||| | || | | || ||| | || ||||| | | Sbjct 22105 TGGTGGTACTACATCTCTAAAGGAGTGGAGTTTTTGGACACTGTATTTTTCATTTTGAGG 22046 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 || || || || ||| ||||||||||||| || || ||||| | || ||||| | || Sbjct 22045 AAAAAGTTCAACCAAGTTAGTTTTCTACACGTCTACCATCACTGCACCATGTTCATCCTG 21986 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || || |||||| || | |||||||| Sbjct 21985 TGGTGGATTGGCATCAAATGGGTCCCCGGAGGACA 21951 >seq88123 Length=68930 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | |||||||||| || |||||||| || || | || ||||| || || Sbjct 36322 TGGTGGTACTTTGTCTCTAAAGGCATTGAATACCTGGACACAGTGTTTTTCATTCTGAGA 36381 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 || || || || || | | || || || || || || || | || ||||| ||| || Sbjct 36382 AAAAAGTTCAACCAGGTGACCTTCCTGCACGTGTACCACCACTGCACCATGTTCACTCTG 36441 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || || |||||| | ||||||||||| Sbjct 36442 TGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 36476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149096393347152