Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq63492 152 7e-32 seq130778 87.8 3e-12 >seq63492 Length=65416 Score = 152 bits (168), Expect = 7e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||| ||| | || ||||| | || ||||||||||| || |||||||| | |||||| Sbjct 9103 TTGATGATGTCGAAGCCCACCTGGCCTCCGAAGGTGCTCGGCTTCCAGTACTCGGGGGAG 9162 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| |||| |||||||||| |||||||| ||||| ||||||| ||| | ||| || Sbjct 9163 CAGATGGCGTTTCCCATGAGGCCCTTGAGGGAGAACGGGGCCCCCATCTCCACCATGGTC 9222 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| |||||||| | |||||| ||||||| | || | ||||| |||||| Sbjct 9223 TCCCCGAATATGGCGTTCTCCCTGGGCTTCTCCACCAGCAGGCCCGGGTACAGCTCCACG 9282 Query 8921 GCCTCGATGTCTCCGTA 8937 || || | || |||||| Sbjct 9283 GCGTCCACGTGTCCGTA 9299 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| | |||||||| | ||||| || || ||||| ||| | || || | Sbjct 11785 CCGATCAGGATGAGTCTCGCCGTCTGGAAGAGCCTCTCGTCGTCCCAGTAGGGGTGCACC 11844 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 || || || |||||||| | |||||| || | ||||||||| || |||||||||||| Sbjct 11845 TCCTTGAGCACGTCGCACACCCGGTTGTGCTCGCGGAGCCAGATGGTGGCGTACATCATG 11904 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 || || || |||||||| || ||||| || || || || Sbjct 11905 AGGCCGGGGACCAGGCCGAACGCCTCGTGTCCCACCGC 11942 >seq130778 Length=4134 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 |||||| || || || |||| || || | || || || ||||| ||||||||||| Sbjct 1697 GTTGCAGAATTCACTATATCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 1756 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 || || || ||| |||| ||| || ||||| |||||||| |||||||||| ||| Sbjct 1757 ATGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 1816 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | |||||||| || || | || ||||| | || |||| || || |||| || Sbjct 1817 ACCATGCTCTCTCCAAATACTGCTCCTGGACGAGTTTTCTCCAACATGAGACCGGGATAA 1876 Query 8912 AACTCCACAGCCTCGATGTCTCC 8934 || || | ||| | ||||| || Sbjct 1877 AATTCAAGAGCATTTATGTCACC 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707142786951360