Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq130048 127 2e-24 >seq130048 Length=4274 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| || ||||| | || ||||| || || | ||| || ||| Sbjct 2377 CCACCTCTGAGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAG 2436 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| |||||||| ||| ||||||| | || ||||||||||| ||| Sbjct 2437 AGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2496 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| | | ||||||| | | || || Sbjct 2497 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACC 2556 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| ||||||||||| || || || || || |||||||| |||||| Sbjct 2557 TCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATG 2604 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | || ||||||||||||||||| ||||| ||| Sbjct 2221 TCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTG 2280 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | ||||| | | || || || | |||||| Sbjct 2281 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATG 2340 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || |||||||||||||||||||| Sbjct 2341 GTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447416785599840