Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq145654 172 9e-39 seq126913 172 9e-39 seq105995 172 9e-39 seq153270 168 1e-37 seq100875 159 5e-35 seq100864 156 7e-34 seq70773 156 7e-34 seq59564 149 1e-31 seq153723 140 5e-29 seq74948 100 4e-17 >seq145654 Length=6259 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 3137 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 3196 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 3197 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 3256 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 3257 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 3316 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 3317 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 3376 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 3377 CCGCACTCTGTACGGCTTCGGAGGTTAA 3404 >seq126913 Length=2313 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 399 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 458 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 459 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 518 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 519 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 578 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 579 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 638 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 639 CCGCACTCTGTACGGCTTCGGAGGTTAA 666 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 1962 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 1903 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 1902 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1843 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 1842 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 1783 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 1782 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 1723 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 1722 CCGCACTCTGTACGGCTTCGGAGGTTAA 1695 >seq105995 Length=5545 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 615 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 556 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 555 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 496 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 495 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 436 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 435 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 376 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 375 CCGCACTCTGTACGGCTTCGGAGGTTAA 348 >seq153270 Length=14643 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 558 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 499 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||| |||||| |||| || || |||| || |||| Sbjct 498 CCGCCGTCTGGCTCGCCGCGGTGGAGTAAAGCGTATCTCAGGTCTGATCTACGAGGAGAC 439 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| || |||| ||| ||| || ||| ||||| Sbjct 438 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAATGTGATCCGTGACGCTGTCACCTACACCGA 379 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | |||||| | || || || |||| | || || Sbjct 378 GCACGCCAAGAGAAAGACCGTAACCGCAATGGATGTGGTGTACGCTCTGAAGAGACAGGG 319 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 318 CCGCACTCTGTACGGCTTCGGAGGTTAA 291 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | |||||| ||||||||||| || ||||||||||| ||||| Sbjct 3122 CGCTAAGCGTCACCGTAAGGTTCTTCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 3063 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| | |||||||| |||||||| |||||| |||| || || |||| || |||| Sbjct 3062 TCGCCGTTTAGCTCGTCGCGGTGGAGTAAAGCGTATCTCAGGTCTGATCTACGAGGAGAC 3003 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| || |||| ||| ||| || ||| ||||| Sbjct 3002 CCGCGGAGTGCTCAAGGTTTTCCTGGAGAATGTGATCCGTGACGCTGTCACCTACACCGA 2943 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | |||||| | || || || |||| | || || Sbjct 2942 GCACGCCAAGAGAAAGACCGTAACCGCAATGGATGTGGTGTACGCTCTGAAGAGACAGGG 2883 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 2882 CCGCACTCTATACGGCTTCGGAGGTTAA 2855 >seq100875 Length=8246 Score = 159 bits (176), Expect = 5e-35 Identities = 198/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 7693 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 7752 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 7753 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGAC 7812 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 7813 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 7872 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | ||||| || | || | || || Sbjct 7873 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGAGGCAGGG 7932 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 7933 CCGCACTCTCTACGGCTTCGGAGGTTAAACT 7963 >seq100864 Length=4760 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 1637 CGCCAAGCGTCACCGTAAAGTTCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 1578 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 1577 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGAC 1518 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 1517 CCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 1458 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || | || | || || Sbjct 1457 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCGCTCAAGAGGCAGGG 1398 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 1397 CCGCACTCTCTACGGCTTCGGAGGTTAAACT 1367 >seq70773 Length=63229 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 5174 CGCCAAGCGTCACCGTAAAGTTCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 5115 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 5114 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGAC 5055 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 5054 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 4995 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | ||||| || | || | || || Sbjct 4994 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTCTACGCCCTCAAGAGGCAGGG 4935 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 4934 CCGCACTCTCTACGGCTTCGGAGGTTAAACT 4904 >seq59564 Length=5502 Score = 149 bits (164), Expect = 1e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 435 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 494 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || ||||||||| |||| || | |||| || |||| Sbjct 495 CCGCCGTCTGGCTCGCCGCGGCGGCGTCAAGCGTATCTCCGGGCTCATCTACGAGGAGAC 554 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 555 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 614 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || | ||||| |||||| ||||||| | ||||| || Sbjct 615 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTCTACGC 659 >seq153723 Length=1273 Score = 140 bits (154), Expect = 5e-29 Identities = 196/273 (72%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || || |||||||| || ||||||||||| || || Sbjct 577 CGCCAAGCGTCACCGTAAAGTTCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 636 Query 16492 CCGTCGTCTGGCTCGTCGTGGTG--GAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAG 16549 ||| ||||||||||| || || | | ||||||| ||||| || | |||| || ||| Sbjct 637 CCGCCGTCTGGCTCGCCGCGGCGGCGCGTCAAGC--GTCTCCGGGCTCATCTACGAGGAG 694 Query 16550 ATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 | || | || | ||| ||||||| ||| ||| |||| ||| || || ||| ||| Sbjct 695 ACCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACC 754 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | ||||| |||||| ||||||| | || || || | || | || Sbjct 755 GAGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCGCTCAAGAGGCAG 814 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||||| | | || || || ||| ||||| || Sbjct 815 GGCCGCACTCTCTACGGCTTCGGAGGTTAAACT 847 >seq74948 Length=35574 Score = 100 bits (110), Expect = 4e-17 Identities = 181/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||| |||| | |||||| ||||||||||| || ||||||||||| || ||| Sbjct 1212 AAGCGTCACCGCAAAGTTCTTCGTGATAACATCCAGGGCATCACCAAGCCTGCCATCTCC 1153 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 | | | |||| | ||||| | |||||| |||| | || |||| || |||| ||| Sbjct 1152 CATTTTGCTCACTGGAGTGGAATTAAGCGTATCTCCAGTCTGATCTACGAGGAGACCCGT 1093 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | || | ||| | || || ||| ||| |||| ||| | || ||| ||| ||||| Sbjct 1092 GGAGTGCTCAAGGTTTTGCTGGAGAACGTGATCCGTGACTCAGTCACCTACACCAAGCAC 1033 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 | || || ||||||| ||||||| | || || || |||| | || |||| Sbjct 1032 GGCAAGCGAAAGACTG------CCATGGACGTGGTGTACGC--TGAAGTGACAGGGCCAC 981 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | | || || |||||| ||||| Sbjct 980 ACTCTGTACGGCTTTGGAGGTTAA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78932527878492