Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq77734 612 2e-170 seq142225 120 4e-22 seq89243 104 3e-17 >seq77734 Length=62899 Score = 612 bits (678), Expect = 2e-170 Identities = 1329/1980 (67%), Gaps = 33/1980 (2%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || | | ||||||| || || || ||||| | | Sbjct 12160 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCGTTCCACAGCCCCCG 12101 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 12100 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCT 12041 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || || || || | ||| | ||||||||||| ||||| ||||| || Sbjct 12040 GCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGC 11981 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62480 || || ||||| ||||| || |||| ||| || || || || | ||| ||||| | Sbjct 11980 TGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACC--ATGTTTAGCT 11923 Query 62481 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNN 62540 || || || || || ||| ||| | ||| || | |||||| Sbjct 11922 ATCTTCTCCTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCG 11863 Query 62541 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 || ||||| || ||||| | || ||| || || || || || || || || Sbjct 11862 TACTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTT 11803 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 || |||| ||||| || | ||| || ||| | || || ||||| || ||||||| || Sbjct 11802 TCTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATA 11743 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || ||||| | || |||||||||||| | |||||| || || || || Sbjct 11742 TTCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCG 11683 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | || || |||||||| || ||||| || || | | || ||| | || || |||||| Sbjct 11682 AGACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGA 11623 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACC 62837 | || || || || || || || || || ||||| ||||| ||||||||||| ||| Sbjct 11622 ACTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACT 11563 Query 62838 A---CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAG 62891 || ||| ||||| | ||||| || ||| ||||| ||||||| | Sbjct 11562 GAGGCAAGCTT---TTTGA---AGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGT 11509 Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCT 62949 |||| ||| |||| ||||| || |||||||||| | || | | ||| | | |||| Sbjct 11508 GCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCT 11451 Query 62950 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63009 | ||||| | ||||| || ||||| || || ||||| || || |||||||| |||||| Sbjct 11450 CTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTAC 11391 Query 63010 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63069 | ||||| || || | ||| | ||||| || || || ||||||| ||||| || || | Sbjct 11390 AGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCAT 11331 Query 63070 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTAT 63129 ||| || ||||||| | || ||| ||| | || ||||| | || | Sbjct 11330 ACCACACCTGCTGAGCCTTGACTACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGT 11271 Query 63130 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 63189 ||| || ||||| || |||||| | |||| ||||| || ||| || |||| Sbjct 11270 ACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCACA 11211 Query 63190 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63249 |||| ||||| || || | | ||| | ||||| || | |||||| ||||| || | Sbjct 11210 TCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAGGG 11151 Query 63250 CTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308 | ||| || || |||| | || || ||||| || || || || || || | || ||| Sbjct 11150 C-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAAGG 11092 Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368 || | | | ||| | ||||| || |||| ||| ||||| | | || || ||||| Sbjct 11091 AAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTA 11032 Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428 || || || || || | ||| | || ||||| ||||| || |||| |||||| | || Sbjct 11031 TTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGG 10972 Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488 || ||||| ||||||| || || | || ||||| || | | | ||| |||| | Sbjct 10971 CCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAACT 10912 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63548 | || ||| || || ||||| ||| ||||| | ||| ||| |||| | |||||||| Sbjct 10911 GCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCATAA 10852 Query 63549 ATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 || || || ||||| ||||| ||||| ||||| || ||||| || | ||| | | Sbjct 10851 ATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTCTG 10792 Query 63609 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63668 | || || || || || | || ||||| || || || ||||| || ||||| || || Sbjct 10791 TTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGG 10732 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 ||||| |||||||| || | ||| ||||| || || ||||| || || || | ||| Sbjct 10731 TTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCATG 10672 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | ||| || || || | ||| | | || || ||||||| || |||||| || Sbjct 10671 AGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCTCT 10612 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 | |||||||| ||||| | || || ||||| |||| || || || ||| | || ||| Sbjct 10611 AGGGTTTTAAAGCCAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAATTG 10552 Query 63849 AGTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGAGA 63904 || || || | ||| | || ||||| | ||| |||| | || || || || Sbjct 10551 AGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGA 10496 Query 63905 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63964 || | ||| ||| |||||||||||||| | ||||||||| || ||||| || | Sbjct 10495 GTGGCGCTTGTTTAAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAACAC 10436 Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 || || || || || || || || || || || || | || || || | ||||||||| Sbjct 10435 CTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAATC 10376 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 || || | || || ||||| || || || || || || ||||||||||| || || Sbjct 10375 GGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACAGT 10316 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64144 || |||||| | || | ||||| || |||||||| | |||| || || | | Sbjct 10315 GGTCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACAAA 10256 Query 64145 ATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 |||| ||| | |||||||| | ||| || ||||| |||||||||||||||||||| Sbjct 10255 CTCCGCGTTGAGCCCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATGAC 10196 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || ||||| ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq142225 Length=5922 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| ||||| |||||||| ||||||||||| || || ||||| |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 33446 C 33446 | Sbjct 3054 C 3054 >seq89243 Length=32234 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||||| || || ||||| || | ||||||||||| || ||||| || ||| | | Sbjct 16517 CATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCAT 16576 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 16577 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGAT 16636 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 || | |||||| || |||||||| | || || ||||| || || |||||||| || | Sbjct 16637 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGC 16696 Query 62755 TCTTATTAGA 62764 | | ||||| Sbjct 16697 GCATGTTAGA 16706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || ||||||||||| || || || | ||||| || |||||||| || || ||| Sbjct 17037 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 17096 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| |||| || ||||| || || || ||| |||| || || || || |||| || Sbjct 17097 CTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTGAC 17156 Query 63057 TCTATAATCGCTTTCCA 63073 || ||||| || | ||| Sbjct 17157 TCAATAATGGCATACCA 17173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621732110339040