Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq77734 150 5e-31 seq89243 84.2 6e-11 >seq77734 Length=62899 Score = 150 bits (166), Expect = 5e-31 Identities = 547/843 (65%), Gaps = 20/843 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | ||| || || || |||||| | ||| | || ||| |||| ||| Sbjct 10634 ATCAATGGAAAAGTGGCTGAGCGTCCACAACATATGCTCATGAGAGTAGCTGTTGGAATC 10693 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATT 363548 || | ||| |||| || || ||||| || || || || || || ||| || Sbjct 10694 CACAAAACTGATATTGACGCGGCCATTGAGACCTACAACCTGCTGTCTGAGAAGTGG-TT 10752 Query 363549 CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 ||| || ||| | || || ||| ||| || || || | || ||| | || || Sbjct 10753 CACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACCAACAGACCCCAGCTCTCCAGCTG 10812 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 ||| || || |||||||| || ||| || || || | ||||||||| || | || Sbjct 10813 CTTCCTACTGGCCATGAAGGATGACAGCATTGAAGGCATTTATGACACACTCAAACAATG 10872 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-C 363727 ||| || || || || |||||| || ||||||||| | | | || | || | Sbjct 10873 TGCACTCATCTCAAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGCATTAGATCAAC 10932 Query 363728 AGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 || || |||||| || ||| || | || ||||| || || || ||||| | | Sbjct 10933 AGGT-AGCTACATTGCAGGAACAAATGGTAATTCAAATGGCCTTGTGCCAATGCTGAGGG 10991 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 ||| | |||| || || | ||||| ||||| ||||| || || || || |||| Sbjct 10992 TGTATAACAACACAGCACGTTACGTGGACCAAGGTGGCAATAAACGACCGGGTGCCTTTG 11051 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACA 363907 | ||||| || ||||| || || | ||||| || |||||| | |||||||| Sbjct 11052 CCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTTGAGTTAAAGAAAAACA 11111 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 | || |||||||| | | ||||| || || |||||||| || ||| | |||| | Sbjct 11112 CTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATTTGT 11171 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 | |||||| | ||||| || | ||||| | | ||||| || || || | Sbjct 11172 TCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTTTGATGTGCCCCAGTGAGTGCCCTG 11231 Query 364028 GTCTTTCCGA-TGTATGGGGTGACGACTATGTT--GCTCTATACG----AAAAGTATGAA 364080 | || || ||| ||||| || || | || ||| || ||| | || | || Sbjct 11232 GGCTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTGTACACGCGCTACGAGCAGGAG 11290 Query 364081 T-CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 | ||| |||| | ||| | ||| || ||| || | |||| ||||||||| || Sbjct 11291 GGCAGAGTGAAACGG--GTA-GTCAAG----GCTCAGCAGGTGTGGTATGCCATCATAGA 11343 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 || |||| ||||||||||| || || ||||||||||||||| | || ||| | ||| Sbjct 11344 GTCTCAGACAGAGACAGGAACTCCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAG 11403 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||||||||| | | || || || | || ||| | || || |||||| | || || Sbjct 11404 TAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTGCACAGAGATTGTGGAGTA 11463 Query 364260 CAC 364262 || Sbjct 11464 TAC 11466 >seq89243 Length=32234 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| ||||| | || |||||||| ||| ||| | ||||| |||||||| | Sbjct 17624 GGGGCATTTGCGGTCTACCTCGAGCCATGGCATTTTGATGTGTTTGATTTTCTTGACTTA 17565 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| || |||||||| | | || || ||| |||||| ||| || ||| | Sbjct 17564 AAGAAAAACACTGGTAAAGAGGAGCAGAGAGCCCGAGATTTGTTCTTTGCTCTGTGGATC 17505 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | || | |||||||||||| ||||| Sbjct 17504 CCAGATCTTTTTATGAAGCGTGTGGA 17479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300747787226408