Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq77734 125 7e-24 seq130048 100 3e-16 seq89243 100 3e-16 >seq77734 Length=62899 Score = 125 bits (138), Expect = 7e-24 Identities = 709/1120 (63%), Gaps = 34/1120 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || |||| ||||||||| |||| | || | || || | ||| ||| ||| | Sbjct 12072 TTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTAGTGTAGGCT 12013 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | ||||| ||||| |||| ||||| || || | || || |||||| |||| | Sbjct 12012 TCGATGGACTCATTATTACCCAATATTTGTGCTGTGGAGGCAGTAGGCATGGGGGCCAAC 11953 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || || | | || || || || | ||||| ||| ||| ||||| Sbjct 11952 AACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTCCTTAAGCAGTTTCCAGTCCCAG 11893 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 ||| |||||| | ||||||||||||||||||| |||||||| || | || Sbjct 11892 AGCAGAGTCGGTACCTTCTCCCACATGTCGTACTGCAGAATGCCCTTACTCACTGGAGAA 11833 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 ||| | ||| ||| | |||| |||| || | ||| || || | ||||| | Sbjct 11832 CCTGGGTAGGTCTCATAA--GGCCCATCTTTTTCTGCTAACTCACAGCTTGACTCCAAGG 11775 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | | || || ||||| || || | || |||||| |||||| || || Sbjct 11774 CAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGACTTTCAA 11715 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| || | || ||||| ||||| ||||| | || | || || |||| Sbjct 11714 ATGGATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACACCAATTCCAATAGGCC 11655 Query 145476 GATG-------TTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 || ||| | ||| ||| |||| ||| | ||| | | ||| | || Sbjct 11654 TGTGGCGTCTGTTTGA-GTT-CTCCGCCTCTGGAACTGGGTAGTA----GTTTATG-TCA 11602 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAA-CTTTTCAAAGTC 145587 || || || || | ||||| || | ||| || || | || |||| ||||| ||||| Sbjct 11601 ATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGAC-TGAGGCAAGCTTTTTGAAGTC 11543 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| | | | | | || ||| | |||| || || || ||||| ||||| || Sbjct 11542 AAAG-GTCCGTTCTGGAGTTACATACA--TGTTGAGTGCAATAGAAGCCAAGTTACACAC 11486 Query 145648 TGCCGTCTCCTC--GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || ||| || ||| | | || | || ||||| | |||||| || || |||||| Sbjct 11485 AGCTACCTCATCTTGGCTTG--TATACTCCACAATCTCTGTGCACAAGTTACTGCATTTG 11428 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| |||| ||| ||||| ||||| |||||||| || || || ||||| | |||||| Sbjct 11427 ATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAA 11368 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACC 145825 || || ||||| ||| | ||| | ||| | || | ||| || || Sbjct 11367 GGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACT 11308 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 | | | | |||||| | ||||| | |||| |||| ||||||| | || Sbjct 11307 ACCCGTTTCACTCTGCCCTCCTGCTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCC 11248 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 | || || ||| || || |||| |||| ||||||| ||||| | |||| Sbjct 11247 CAACACTCATCCAGCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTT 11188 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAG--TCGCGCGCTT 146003 | || | || ||| |||||||| || | ||| || || || | | | ||| || || Sbjct 11187 TCCACCCTCTTCATGAACAAATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTC 11128 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 ||| ||||| ||| ||||| ||| || | ||| | | | | ||| ||||| Sbjct 11127 TGC--TCCTCTTTACCAGTGTTTTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCC 11070 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT---TTGCCACCCTGGTCCACGTGAC 146120 | || || | || | ||| | ||| || |||| |||||||| |||||||||| || Sbjct 11069 ATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAAC 11010 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCC 146160 || | |||||||| | || | || ||| ||| | | ||| Sbjct 11009 GTGCTGTGTTGTTATACACCCTCAGCATTGGCACAAGGCC 10970 >seq130048 Length=4274 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||| || | ||| | ||| || || || || |||||||| ||| Sbjct 2148 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 2207 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || ||||||||||| || |||| | | |||||| || ||||| Sbjct 2208 GAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 2267 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | || | || ||| ||| ||| | Sbjct 2268 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCAC 2327 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || ||||| || || |||||||| Sbjct 2328 CTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| ||||| || | ||| || || || || |||||||| ||| | ||||| Sbjct 2389 CGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA 2448 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||| ||||| || |||| | | |||||| || || || || || || ||| Sbjct 2449 TCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 2508 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | || | ||| || ||| ||| | || | ||| | | Sbjct 2509 TCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATG 2568 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||||||||| || || || || || || |||||| Sbjct 2569 GTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATG 2604 >seq89243 Length=32234 Score = 100 bits (110), Expect = 3e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| ||| ||||| | ||||| ||||| |||||||||| || | ||| ||||| | Sbjct 17035 TGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGT 17094 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 |||| ||||||||||| || || |||||||||||||| || Sbjct 17095 TACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGG 17134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471092115432960