Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq130048 100 2e-16 >seq130048 Length=4274 Score = 100 bits (110), Expect = 2e-16 Identities = 172/247 (70%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 16694 TTTAGCCGCATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTT 16750 |||| | ||||||| || || | || | ||| || | ||| || ||||| || || Sbjct 2131 TTTAATCACATTTACTGGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTC 2190 Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 || ||||||||||||| | ||| | |||| || | || ||||| ||| | || ||| Sbjct 2191 TGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAGC 2250 Query 16811 CGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCA 16868 | ||| || || ||| | ||| || ||||| || || || |||||| | | | Sbjct 2251 CTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTTTCAA 2308 Query 16869 CAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAA 16928 ||||||| ||||||| |||| |||||||| || || || || ||||| ||||| | Sbjct 2309 TGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGA 2368 Query 16929 TCTGCAT 16935 ||||||| Sbjct 2369 TCTGCAT 2375 Score = 100 bits (110), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | || || || || || || || ||||||||||||| Sbjct 2377 CCACCTCTGAGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAG 2436 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||||| ||| | || |||| ||| || || || Sbjct 2437 AGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 2496 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | |||||| | |||||| Sbjct 2497 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTCACGTTTTCAATAGTGTCACTGGGCTCAA 2554 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCTT 16946 || | |||||||||||| ||||| || || |||||||| || ||||| ||| ||||| Sbjct 2555 CCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATGTTGGCGCCTT 2614 Query 16947 A 16947 | Sbjct 2615 A 2615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404317609211560