Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq64789 125 5e-24 seq11927 116 2e-21 seq90582 95.1 8e-15 seq92507 89.7 3e-13 seq116453 84.2 1e-11 seq129479 82.4 5e-11 >seq64789 Length=32879 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||| ||| |||||||| Sbjct 16823 ACCCGACCAAGTTTTTTGGTTGTGAACTGGGCGCTCAGACCCAGTTCGATTCCAAAAACG 16764 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| |||||| ||||| || || | | ||||||||||||| | || ||||| | Sbjct 16763 ACCGCTACATCGTCAACGGCTCCCACGAGGCCAACAAGCTGCAGGACATGCTCGACGGGT 16704 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || ||||||||||| || || || ||||| || ||||| || Sbjct 16703 TCATACGGAAATTTGTGCTGTGCTCCGAGTGTGACAACCCCGAAACCGATCT 16652 >seq11927 Length=231 Score = 116 bits (128), Expect = 2e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 111 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 52 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | || ||||||||||| Sbjct 51 CGTGTTAGTATTTAGCCTT 33 >seq90582 Length=26566 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| ||| Sbjct 14884 CTCTCTCTTCAATGTTCTTTTCAACTTTCCCTTATGGTACTTGTCGACTATCGGTATCGT 14825 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 14824 GCCAATATTTAGCCTTA 14808 >seq92507 Length=28870 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCG-CTATCGGTCTCG 20005 ||| ||||||||||||||||||||||| |||| || |||||| |||| |||||||||||| Sbjct 14162 CTCGCTCTTCAAAGTTCTTTTCAACTTCCCCTTACAGTACTT-TTCGACTATCGGTCTCG 14104 Query 20006 CGGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 14103 TGTTGGTATTTAGCCTTA 14086 >seq116453 Length=33696 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||| | |||||| |||| | ||||| |||||| | Sbjct 23878 TCTCTCTTCAAAGTTCTTTTCAACTTTCCATTACGGTATTTGTCCACTATCAGTCTCGTG 23819 Query 20008 GTAATATTTAGCCTTA 20023 | |||||||||| Sbjct 23818 CGGGTGTTTAGCCTTA 23803 >seq129479 Length=43895 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||| |||||| ||||||| ||||||||||||||||||||| || ||||| ||| | Sbjct 20774 CTCTCCTCAAAGCTCTTTTCCACTTTCCCTCACGGTACTTGTCGACTGTCGGTATCGTGC 20715 Query 20009 TAATATTTAGCCTTA 20023 || ||||||| |||| Sbjct 20714 TAGTATTTAGGCTTA 20700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334310202020564