Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq77734 623 1e-173 seq62746 105 8e-18 seq142225 102 1e-16 seq89243 100 4e-16 >seq77734 Length=62899 Score = 623 bits (690), Expect = 1e-173 Identities = 1334/1982 (67%), Gaps = 37/1982 (2%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| ||||||||| | || || | | ||||||| || || || ||||| | | Sbjct 12160 CTGTATGGATCCATTTTGAGCAATGAGCTTATTCTTCATTTCCTCGTTCCACAGCCCCCG 12101 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || || | | | || ||||| || || || | ||||| ||||| || | ||||| Sbjct 12100 TTCAGTCAGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCT 12041 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || || || || | ||| | ||||||||||| ||||| ||||| || Sbjct 12040 GCGTGTGTAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGC 11981 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62335 || || ||||| ||||| || |||| ||| || || || || | ||| ||||| | Sbjct 11980 TGTGGAGGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACC--ATGTTTAGCT 11923 Query 62336 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNN 62395 || || || || || ||| ||| | ||| || | |||||| Sbjct 11922 ATCTTCTCCTTAAGCAGTTTCCAGTCCCAGAGCAGAGTCGGTACCTTCTCCCACATGTCG 11863 Query 62396 NNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 || ||||| || ||||| | || ||| || || || || || || || || Sbjct 11862 TACTGCAGAATGCCCTTACTCACTGGAGAACCTGGGTAGGTCTCATAAGGCCCATCTTTT 11803 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 || |||| ||||| || | ||| || ||| | || || ||||| || ||||||| || Sbjct 11802 TCTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGATA 11743 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || ||||| | || |||||||||||| | |||||| || || ||||| Sbjct 11742 TTCAGCAGCTGGGCTTCAGGACTTTCAAATGGATAACGCATGAGAATGAAGGCATCTGCG 11683 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 | || || |||||||| || ||||| || || | | || ||| | || || |||||| Sbjct 11682 AGACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTCTGGA 11623 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACC 62692 | || || || || || || || || || ||||| ||||| ||||||||||| ||| Sbjct 11622 ACTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACT 11563 Query 62693 A---CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAT 62746 || ||| ||||| | ||||| || ||| ||||| ||||||| | | Sbjct 11562 GAGGCAAGCTT---TTTGA---AGTCAAAGGTCCGTTCTGGAGTTACATACATGTTGAGT 11509 Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCT 62804 |||| ||| |||| ||||| || |||||||||| | || | | ||| | | |||| Sbjct 11508 GCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTT--GTATACTCCACAATCT 11451 Query 62805 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 62864 | ||||| | ||||| || |||||||| || ||||| || || |||||||| |||||| Sbjct 11450 CTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTAC 11391 Query 62865 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 62924 | ||||| || || | ||| | ||||| || || || ||||||| ||||| || || | Sbjct 11390 AGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTCTATGATGGCAT 11331 Query 62925 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTATAGTGT 62982 ||| || ||||||| | || ||| |||| ||| | ||||| | || Sbjct 11330 ACCACACCTGCTGAGCCTTGACTACCCGTTTCA--CTCTGCCCTCCTGCTCGTAGCGCGT 11273 Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 |||| || ||||| || |||||| | ||||| ||||| || ||| || || Sbjct 11272 GTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCACTCACTGGGGCA 11213 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||||| ||||| || || | | ||| | ||||| || | |||||| ||||| || Sbjct 11212 CATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCAGGGATCCATAG 11153 Query 63103 AGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 || ||| || || |||| | || || ||||| || || || || || || | || | Sbjct 11152 GGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTTTCTTTAACTCAA 11094 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 |||| | | | ||| | ||||| || |||| ||| ||||| | | || || |||| Sbjct 11093 GGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCACCCGGTCGTT 11034 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 | || || || || || | ||| | || ||||| ||||| || |||| |||||| | || Sbjct 11033 TATTGCCACCTTGGTCCACGTAACGTGCTGTGTTGTTATACACCCTCAGCATTGGCACAA 10974 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 ||||| || ||||||| || |||| || ||||| || | | | ||| |||| Sbjct 10973 GGCCATTTGAATTACCATTTGTTCCTGCAATGTAGCTACCTGTTGATCTAATGCAGCTAA 10914 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 || || ||| || || ||||| ||| ||||| | ||| ||| |||| | || |||| Sbjct 10913 CTGCTACACCAATCCCTCCTGCAGATTTTGAGATGAGTGCACATTGTTTGAGTGTGTCAT 10854 Query 63402 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63461 | ||||| || || || |||||| ||||| ||||| || ||||| || | ||| | | Sbjct 10853 AAATGCCTTCAATGCTGTCATCCTTCATGGCCAGTAGGAAGCAGCTGGAGAGCTGGGGTC 10794 Query 63462 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTA 63521 | || || || || || | || ||||| || ||||| ||||| || ||||| || | Sbjct 10793 TGTTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCA 10734 Query 63522 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 | ||||| |||||||| || | ||| ||||| || || ||||| || || || | || Sbjct 10733 GGTTGTAGGTCTCAATGGCCGCGTCAATATCAGTTTTGTGGATTCCAACAGCTACTCTCA 10674 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 | | ||| || || || | ||| | | || || ||||||| || |||||| | Sbjct 10673 TGAGCATATGTTGTGGACGCTCAGCCACTTTTCCATTGATTTTCAGCAGGTAGGAGCGCT 10614 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 | | |||||||| ||||| | || || ||||| |||| || || || ||| | || | Sbjct 10613 CTAGGGTTTTAAAGCCAAAGAAATTATAAGAAAAATCTCTATCATAGATTATAGCAGAAT 10554 Query 63702 TGAGTTTATCCTTATATTTGTTA--ACTACATCCATGGTAATACTTG--AAATAATAGGA 63757 |||| || || | ||| | || | ||| | ||| |||| | || || || Sbjct 10553 TGAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGG 10498 Query 63758 AAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 63817 | || | ||| ||| || ||||||||||| | ||||||||| || ||||| || Sbjct 10497 GAGTGGCGCTTGTTTAAAGGGTTAACATAGTTGAACAGATCCTCCATGACATCACTGAAC 10438 Query 63818 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAA 63877 | || || || ||||| || || || || || || || | || || || | ||||||| Sbjct 10437 ACCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATGCGTGCAGCCAGGAGGGCATAA 10378 Query 63878 TCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACC 63937 || || || | || || ||||| || || || || || || ||||||||||| || Sbjct 10377 TCGGGGTGCTTAGTGGTCAGTGTGGCAGCAATCTCTGCAGCGAGTGTGTCCAATTCCACA 10318 Query 63938 GTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 63997 || || || ||| | || | |||||||| |||||||| | |||| || || | | Sbjct 10317 GTGGTCACTCCACTGTACAGACCTTGGATCACCTTCATTGTGATTTGTGCGGGGTCCACA 10258 Query 63998 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATG 64057 || | ||| | |||||||| | ||| || ||||| |||||||||||||||||| Sbjct 10257 AACTCCGCGTTGAGCCCATAACAGAGCTTTTGGATTCGAGAGGTGATTTTATCAAACATG 10198 Query 64058 AC 64059 || Sbjct 10197 AC 10196 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || ||||| ||||| || || |||||| || | || ||||| ||||| |||| Sbjct 12422 TCCAGCCATAAAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCTGCAATATGAATAT 12363 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||| |||| || | |||||||||||| |||| || |||| Sbjct 12362 TTAGGGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTTAGTATAGTCT 12303 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | |||||||||| ||||||||| | | || | ||| ||||| Sbjct 12302 TCTGAGATATTTCCCAAACAGTTTTATACAGCTGTTTTAAATCATCTGG 12254 >seq62746 Length=64918 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 62145 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGGCCAGGCATTAGACCCCTCTTTT 62086 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||| | || | ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 62085 TCAGCCAATAAATAGCAGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAACG 62026 Query 32803 CAATAAGTCTCTCTCC 32818 | | || ||| || || Sbjct 62025 CCACAATTCTTTCACC 62010 >seq142225 Length=5922 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| || || | |||||||| || || ||||||||||| ||||| || || | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || |||| || || |||||||| ||||| ||||| || || || || |||| Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 32803 C 32803 | Sbjct 3054 C 3054 >seq89243 Length=32234 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||||| || || ||||| || | ||||||||||| || ||||| || ||| | | Sbjct 16517 CATATGATTCATAAGGTCCATCTTGGGCAGCTAGTTCAGTGCTGGCCTCCAAGGCAGCAT 16576 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||||||||| || || |||| | || |||| || || || || |||||||||| Sbjct 16577 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTCTTCACTTTCAAATGGAT 16636 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 || | |||||| || ||||| || | || || ||||| || || |||||||| || | Sbjct 16637 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGGACACCGATCCCAATAGGTCTGTGGC 16696 Query 62610 TCTTATTAGA 62619 | | ||||| Sbjct 16697 GCATGTTAGA 16706 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| || ||||||||||| || || || | |||||||| |||||||| || || ||| Sbjct 17037 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 17096 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||||| |||| || ||||| || || || ||| |||| || || || || |||| || Sbjct 17097 CTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCGGTCTGTGAC 17156 Query 62912 TCTATAATCGCTTTCCA 62928 || ||||| || | ||| Sbjct 17157 TCAATAATGGCATACCA 17173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632396069102400