Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq130048 125 6e-24 >seq130048 Length=4274 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||||||| ||||||| | || || ||| | | Sbjct 2603 ATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCCAGT 2544 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| ||||| || || ||||| || || || Sbjct 2543 GACACTATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 2484 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | || |||| |||||| | ||| ||||| Sbjct 2483 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTACAAC 2424 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||| || || || ||||| || | || ||||| || Sbjct 2423 ATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2377 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | || |||||| | Sbjct 2375 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 2316 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| ||||| ||||| || || || Sbjct 2315 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 2256 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||| | ||||| | ||| ||||| Sbjct 2255 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2196 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 2195 ATCCAGAAAGAATCCACCCTCCATCTTGTCCT 2164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432503902767860