Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq130048 145 6e-30 seq77734 95.1 1e-14 seq89243 87.8 2e-12 >seq130048 Length=4274 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| || || | ||||||||||| |||| ||||| || || || Sbjct 2606 AACATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCC 2547 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || | | || || || |||||||||||||| ||||| || ||| Sbjct 2546 AGTGACACTATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAT 2487 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||||||| | |||||| |||||| ||||||| ||| Sbjct 2486 CAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTAC 2427 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || |||||||| ||| | || ||||| |||| Sbjct 2426 AACATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCG 2389 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || ||||||| || ||||| ||| | Sbjct 2375 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 2316 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||| || ||||| || ||||| Sbjct 2315 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 2256 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || || ||||||| ||||||| |||||| Sbjct 2255 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2196 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 2195 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCG 2161 >seq77734 Length=62899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| ||||| || | |||||| ||||| ||| ||||||||||||| || || ||| Sbjct 11463 TACTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTA 11404 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||| |||| || ||||||||||||| |||||| || || || || || Sbjct 11403 CTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTC 11354 >seq89243 Length=32234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 |||| || ||||| || | ||||| || || ||| |||||||| |||| || || | Sbjct 17035 TGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGT 17094 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCG 129849 |||| ||| ||||||| ||||||||||| | |||||| || || ||||| ||| Sbjct 17095 TACTCTTCCTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCCGTCTCG 17147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418929767060860