Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq130048 159 6e-34 seq142225 93.3 8e-14 >seq130048 Length=4274 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || ||||| || || || ||||| |||||||| || |||||||| || | Sbjct 2386 AGGCGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 2445 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||| || ||||| || || || || || || || || |||||||| ||| Sbjct 2446 CCATCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCC 2505 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||| ||| || || ||||| | || || || | |||| Sbjct 2506 TTGTCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTG 2565 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || |||||||||||||| || || ||||| Sbjct 2566 ATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 2603 Score = 150 bits (166), Expect = 3e-31 Identities = 161/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| ||||| |||||||| || |||||||| || | || ||||| | Sbjct 2168 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAA 2227 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || || || || ||||||||||||||||| || | Sbjct 2228 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGA 2287 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| || || |||||||| ||| | || || |||| |||||||| || Sbjct 2288 TCTTGGCCTTCACATTTTCAATGGTGTC-GCTGGGCTCCACCTCCAGAGTGATGGTCTTC 2346 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || |||||||| Sbjct 2347 CCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 >seq142225 Length=5922 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/136 (77%), Gaps = 6/136 (4%) Strand=Plus/Minus Query 10261 CCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGC 10320 ||||||| | |||||||| ||||||||| || ||| |||||||| || || || || Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 10321 GCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCAC-GCACACCC 10377 |||||||||||||||| ||| || || |||| |||||| |||||||| ||| | Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGA--AGAAGATTCCCTCCACAGCA-GCGA 3058 Query 10378 AGGCGACGAGGCGCTC 10393 |||| |||| |||||| Sbjct 3057 AGGCCACGACGCGCTC 3042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919824729427680