Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq142225 111 3e-19 seq89243 93.3 8e-14 >seq142225 Length=5922 Score = 111 bits (122), Expect = 3e-19 Identities = 101/125 (81%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || ||||| | || || ||||| ||||||||||| || |||||||| |||| |||||| Sbjct 3051 GTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGATCCTTCGCCGCCATTTTCTGG 3110 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| | ||| | |||||||||||| |||||||| ||||| ||||||||||| || Sbjct 3111 CTGAAGAAACGAGGCCT-GATGCCCGGACTGACCTTCTCCAACGAGCTCATCAGCAGAGA 3169 Query 42827 CGAGG 42831 ||||| Sbjct 3170 CGAGG 3174 >seq89243 Length=32234 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || ||||| | ||| ||| | ||||||| || ||||| ||| Sbjct 15967 ACCTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCTCAATG 16026 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| ||||||| || ||||| || ||| || || ||||| || | || ||||| Sbjct 16027 GACTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATCGGGGCCAGGAGCAGG 16086 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGAT 244242 ||||||||||| || ||||| || || Sbjct 16087 CTGTTCCTCACACCATGCCTGTGAAT 16112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942497219173440