Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq20959 87.8 1e-12 seq113249 86.0 5e-12 >seq20959 Length=268 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||||||||| Sbjct 162 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCTAAGGA 104 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 103 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 70 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||||||||| Sbjct 162 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCTAAGGA 104 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 103 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 70 >seq113249 Length=4682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 627 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTAGAGCGATCAAAGG 686 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || |||||||||| Sbjct 687 AACCATAACTGATTTAAAGAGCCATTCG 714 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 627 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGTAGAGCGATCAAAGG 686 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || |||||||||| Sbjct 687 AACCATAACTGATTTAAAGAGCCATTCG 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396307272187288