Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq130048 123 6e-23 seq94371 84.2 5e-11 >seq130048 Length=4274 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| || || || | ||||| || || || Sbjct 2412 TTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAA 2471 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| ||| |||||| || || || || || ||||| || || ||||| Sbjct 2472 GATCAGCCTCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCAC 2528 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || || | || || || || ||||| || || ||||| || ||||| Sbjct 2529 GTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTT 2588 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 2589 GACAAAGATTTGCAT 2603 >seq94371 Length=7202 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| || || ||||| || || || | ||||| | || || ||| Sbjct 5156 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 5215 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 5216 AGGGTGATGGTCTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 5259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177295900737832