Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq142225 100 3e-16 seq89243 95.1 1e-14 >seq142225 Length=5922 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| |||||| ||||| || || || |||| Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| ||||||||| || || || || ||||||||||||||||||||| ||||| | Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 126186 CAAAGAGACGCTC 126198 | | || ||||| Sbjct 3054 CCACGACGCGCTC 3042 >seq89243 Length=32234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || ||| | ||||| ||||||| | |||||||||| || | ||| ||||| |||||| Sbjct 16000 TAAATGTTGCTGGTGTAAGGCTCAATGGACTCATTGTTGCCAAGGATCTGGGCAGTGGAG 16059 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| ||| |||||||| Sbjct 16060 GCTGTGGGCATCGGGGCCAGGAGCAGGCTGTT 16091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596188431935520