Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq80118 93.3 5e-14 seq78950 93.3 5e-14 seq68168 89.7 6e-13 seq76314 87.8 2e-12 seq69950 87.8 2e-12 seq92497 86.0 7e-12 seq71885 86.0 7e-12 seq71063 86.0 7e-12 >seq80118 Length=25487 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 20892 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 20951 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 20952 TCACCACTATACTAACGAGGA 20972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 23324 AAACATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 23383 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 23384 TCACCACTATACTAACGAGGA 23404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 16247 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 16306 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 16307 CACTATACTAACGAGGA 16323 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 || ||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||| Sbjct 16745 AAGTTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTC 16804 Query 57060 ACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 16805 ACCACTATACTAACGAGGA 16823 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 18712 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 18771 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 18772 CACTATACTAACGAGGA 18788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 20273 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 20332 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 20333 CACTATACTAACGAGGA 20349 >seq78950 Length=30083 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || || |||| |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 15269 ATAAAGAATTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 15328 Query 57055 TACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| |||||| Sbjct 15329 TACTCACCACTATACTAACGAGGA 15352 >seq68168 Length=5605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2944 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3003 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3004 TACTAACGAGGA 3015 >seq76314 Length=6022 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 2913 TTTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 2854 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 2853 ACTATACTAACGAGGA 2838 >seq69950 Length=37439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 492 TTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 551 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 552 ACTATACTAACGAGGA 567 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1378 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1437 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1438 TACTAACGAGGA 1449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3133 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3192 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3193 TACTAGCGAGGA 3204 >seq92497 Length=1514 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 137 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 78 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 77 TACTAACGAGGA 66 >seq71885 Length=52513 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 27337 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 27278 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 27277 TACTAACGAGGA 27266 >seq71063 Length=1905 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 266 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 207 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 206 TACTAACGAGGA 195 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 903 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 844 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 843 TACTAACGAGGA 832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542153236272960