Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq130527 87.8 1e-12 seq69888 87.8 1e-12 >seq130527 Length=1485 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 |||||| || |||||||| || |||||||| ||||| || || || ||||| |||| Sbjct 814 AGTGGGCGCGAGATCACAGAGTCCACCACAAATACTCGGAGTCGGACGCGGACCCGCACA 873 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 ||||||| | ||||||| ||| ||||| | || |||||| || | || |||||| Sbjct 874 ACGCCAAACGCGGGTTCTTCTTCGCGCACATCGGCTGGCTCCTGGTCCGGAAACACCCCG 933 Query 108584 ACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTG 108639 |||| ||| | || || || |||| ||| |||| | ||| || || ||| Sbjct 934 ACGTCATCGAGAAGGGACGCAAGCTGGAGCTGAAGGACCTGACCTCTGACCCCGTG 989 >seq69888 Length=51963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 118161 ATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCC 118220 ||||| | |||| || |||||| | ||| || || ||| ||| ||||| || || ||| Sbjct 41392 ATACAGTGGGACACTTCTCCGTCTCTACCCGCTCTCCCTGACTCCTGATAGTAGCCCTCC 41333 Query 118221 AGTGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATC 118280 | |||||||| | ||| ||| || || | ||||| || || |||||||| |||||| Sbjct 41332 ACAGATTTGGGTAGGCTGGCATGGATGACGTAACGCACATCAGGCTTATCGATACCCATC 41273 Query 118281 CCGAACGCTATCGTCGAACATATCAC 118306 ||||| || || || | ||| || || Sbjct 41272 CCGAAGGCAATGGTGGCACAGATGAC 41247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381046749738336