Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq130048 98.7 7e-16 >seq130048 Length=4274 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 ||||| |||||||| || ||||| || |||||||| ||| |||| | | | || || Sbjct 2395 ACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCA 2454 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||| || | |||| | ||| || || ||||| || |||||||| Sbjct 2455 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 2514 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || |||| ||||| || || || || || | ||| ||||||||| Sbjct 2515 ATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTA 2574 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || ||||| |||||||| || Sbjct 2575 CCGGTGAGGGTCTTGACAAAGATTTGCATGTT 2606 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 2172 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGCTG 2231 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | |||| | ||| || || ||||| ||||||||||| || || Sbjct 2232 CTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTT 2291 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| |||| || || ||||| || || || | || ||||| || || || Sbjct 2292 GGCCTTCACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGT 2351 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||| || |||||| Sbjct 2352 GAGGGTTTTCACAAAGATCTGCATA 2376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356712316808540