Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq77734 100 3e-16 seq130048 93.3 4e-14 seq89243 82.4 7e-11 >seq77734 Length=62899 Score = 100 bits (110), Expect = 3e-16 Identities = 485/753 (64%), Gaps = 44/753 (6%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC-GCCTCAG 146102 ||| |||||| |||| |||| || | ||||||||| |||| ||| || | || | | Sbjct 12093 AGGTCCTTGAGCAGATGTGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCTGCGTGTG 12034 Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162 || | |||||| ||| | | |||| ||||| || ||||| | ||| || || || | Sbjct 12033 -TAGATGTTGCTAGTGTAGGCTTCGATGGACTCATTATTACCCAATATTTGTGCTGTGGA 11975 Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC 146222 || ||||||||| |||| || ||| ||| || | || ||| | ||||| || Sbjct 11974 GGCAGTAGGCATGGGGGCCAACAACAAGCTGTTCCTTATACCATGTTTAGCTATCTTCTC 11915 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | ||||| ||| | ||| | || || || | | | ||||||| Sbjct 11914 CTTAAGCAGTTT---CCAGTCCCAGAGCAGA---GTCGGTACCTTCTCCCACATGTCGTA 11861 Query 146280 ATGCATAGTGCCGCGGA---ACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGA 146335 |||| | |||| | | || || | | || | || | |||||||| || || Sbjct 11860 CTGCAGAATGCC-CTTACTCACTGGAG---AACCTGGGTAGGTCTCATAAGGCCCATCTT 11805 Query 146336 TCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | | || | || ||||| | |||| || | | |||| |||||||| |||| | Sbjct 11804 TTTCTGCTAACTCACAGCTTGACTCCAAGGCAGCATAGTAGATGGTCTCAAAGATCTGGA 11745 Query 146396 AGTTGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTC 146453 || | || |||| || | | || || | || ||| || | || | ||||| || Sbjct 11744 TATTCA-GCAGCTGGGCTTCAGGACTTTCAAATGG-ATAACGCATGAGAATGAAGGCATC 11687 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCC 146513 ||||||||||| | || | |||| || | ||| |||| |||| | || | Sbjct 11686 TGCGAGACCCTGCACACCAATTCCAATAGGCCTGTGGCGTCTGTTTGAGTTCTCCGCCTC 11627 Query 146514 CGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGT 146573 | | || |||| ||| |||| |||||||||||||| || | || | | ||| || Sbjct 11626 TGGAACTGGGTAGTAGTTTATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGT 11567 Query 146574 CAAACGATTCAG-CAGGACAT----AGTCAAATGTTTTAGTTTTAACGTTGACGCACTTG 146628 || | || || | | ||||||| || ||| | ||| || || || Sbjct 11566 -----GACTGAGGCAAGCTTTTTGAAGTCAAAGGTCC--GTTCTGGAGTT-ACATACATG 11515 Query 146629 TTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTC----CTTGTCGCAATACTG 146684 |||| || ||||| ||||||||||| || || ||| || ||||| ||||| Sbjct 11514 TTGAGTGCAATAGAAGCCAAGTTACACACAGCTACCTCATCTTGGCTTGT----ATACTC 11459 Query 146685 CACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAA 146744 ||||||||| | ||| | ||| ||||| |||||| |||||||||| | |||||||| Sbjct 11458 CACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTT 11399 Query 146745 CTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 | |||| |||| || ||||| | |||||| || Sbjct 11398 CCTGTTACAGGCATCTTTGTACAACATGTAAGG 11366 >seq130048 Length=4274 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || || || | || || ||||| || || ||||| ||| | ||||| | Sbjct 2389 CGCAGGACTAAGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCA 2448 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || |||||| | ||||||||| || || |||||||||||| Sbjct 2449 TCCTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTG 2508 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||| | ||||| | ||| || || | ||| | Sbjct 2509 TCTTGGATCTTGGCCTTCACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATG 2568 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| ||||| || || || ||||| || |||||| Sbjct 2569 GTTTTACCGGTGAGGGTCTTGACAAAGATTTGCATG 2604 >seq89243 Length=32234 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 |||||||| | ||| ||||||||| | |||||| |||| ||||| | |||||||| | Sbjct 17043 ACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAAATTCTGCTGGTTACTCTTC 17102 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTA--CGGTCCCC 146782 ||||||| | || |||||||||||||| ||||||| Sbjct 17103 CTGTTGCATGCATCTTTGTAGAGCATGTATGGGGTCCCC 17141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474573311914560