Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq77734 107 3e-18 seq89243 93.3 7e-14 >seq77734 Length=62899 Score = 107 bits (118), Expect = 3e-18 Identities = 300/452 (66%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| ||||| ||||||||||||| ||| || | |||| || |||||||||| Sbjct 11461 CTCCACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACT 11402 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||| | |||||||| || ||||||| |||| | || |||| |||| ||||||| Sbjct 11401 CTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTCTCTGTCTGAGACTC 11342 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059 | ||| ||||| | |||||| | || | ||||| | |||| | Sbjct 11341 TATGATGGCATACCACACCTGCTGAGCCTTGACTACCCGTTTCAC--TCTGCCCTCCTG- 11285 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGT-CAGAACCGTACACGTCCATCAGCCCTGGAC 205118 |||||| ||||||||| | |||| | | || |||| || |||||| || | Sbjct 11284 CTCGTAGCGCGTGTACAGCTTCTCAAACTCCTCCCCCCAACAC-TCATCCAGCCCAGGGC 11226 Query 205119 ATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | | |||| ||||||| |||||| ||| | || || |||||||| ||| |||| | Sbjct 11225 ACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAAT 11166 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 | |||||| ||| | || || || || || ||||| | || | ||| ||| | Sbjct 11165 CAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTTT 11106 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | || || || || ||| | | | ||| |||||| ||||| | ||| ||| | Sbjct 11105 TCTTTAACTCAAG-GAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCAAAG 11047 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC 205329 || || || | || || ||||| |||||||| Sbjct 11046 GCACCCGGTCGTTTATTGCCACCTTGGTCCAC 11015 >seq89243 Length=32234 Score = 93.3 bits (102), Expect = 7e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| || || || ||||||| || ||| | | |||| ||||| | || | Sbjct 15962 TGCTGACCTGAAACTCCCCTGAAAGCACCCTGCGAGTGTAAATGTTGCTGGTGTAAGGCT 16021 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | ||| |||||||| | ||||| || ||| ||| |||||||| || ||||||| Sbjct 16022 CAATGGACTCATTGTTGCCAAGGATCTGGGCAGTGGAGGCTGTGGGCATCGGGGCCAGGA 16081 Query 204309 GCAGGGAGTTGCGCACACC 204327 ||||| ||| | |||||| Sbjct 16082 GCAGGCTGTTCCTCACACC 16100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793604210024640