Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq130048 129 7e-25 seq94371 89.7 6e-13 >seq130048 Length=4274 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || || | ||||| || ||||| | || || || ||||| ||||| Sbjct 2142 TTACTGGCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTA 2201 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| |||| || |||||||||||||| || |||| | |||||| || Sbjct 2202 GTCGGAGAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATC 2261 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| |||||| ||| | | | | |||||||| | Sbjct 2262 TGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCGCTGGG 2321 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| || || || || ||||| |||||||| ||||| Sbjct 2322 CTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2375 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| |||||||| | || || ||||| |||||||| || Sbjct 2413 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAG 2472 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||| || | || | || ||||||||| |||||| ||| | | Sbjct 2473 ATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTT 2532 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | || || || | ||||||||||| || || || || || ||| Sbjct 2533 TCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTTTTACCGGTGAGGGTCTTGACA 2592 Query 46583 AAGATTTGCATTTTG 46597 ||||||||||| ||| Sbjct 2593 AAGATTTGCATGTTG 2607 >seq94371 Length=7202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||||||| |||| || ||||| ||||||||||| Sbjct 3102 CCTTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCCTCCAGCTGTTTGCCGGCGAAG 3161 Query 46463 ATCAAGCGCTGCTGGTCGG 46481 |||| |||||||| |||| Sbjct 3162 ATCAGACGCTGCTGATCGG 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564135874238880