Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq130048 134 1e-26 seq142225 105 7e-18 seq62746 98.7 1e-15 seq94371 86.0 6e-12 >seq130048 Length=4274 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || |||||||| | || || ||| ||| | Sbjct 2375 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTGGAGCCCAGC 2316 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || ||||| | || || Sbjct 2315 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 2256 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 2255 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGCACCCTCTCCGACTACAAC 2196 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||| || ||| | || || ||| | || |||||| |||| || |||| Sbjct 2195 ATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGCC 2147 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| || || || || ||||| || |||||||||||| | || || ||| || Sbjct 2606 AACATGCAAATCTTTGTCAAGACCCTCACCGGTAAAACCATCACCCTTGAGGTTGAGCCC 2547 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | ||||| | || | || |||| ||||| ||||| |||||| | || Sbjct 2546 AGTGACACTATTGAAAACG-TGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGA 2488 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||||||||| || || | ||||| ||| |||||| Sbjct 2487 TCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACTCTCTCCGACTA 2428 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || ||| | || || || || || ||||| | ||||| || Sbjct 2427 CAACATCCAGAAAGAATCAACCCTTCACTTAGTCCTGCGCCTCAGAGGTGG 2377 >seq142225 Length=5922 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| |||||||| ||||| ||||| | Sbjct 3174 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 3115 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| || || ||||||| ||||| || || ||||| | Sbjct 3114 TCAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 3055 Query 133037 CCACCAGGCGCTCGCC 133052 |||| | |||||| || Sbjct 3054 CCACGACGCGCTCCCC 3039 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||| ||||||||||||||||||||||||| ||||| ||| Sbjct 1863 ACCAGGTTCTCGTTGACGATTCCGTCGCTGGCGGCGAAAAAGGCCAAAACGTGAGAAATG 1804 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||||| ||| |||| |||||||| || ||| ||||||||||||||| Sbjct 1803 AAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCCACC 1744 Query 133399 T 133399 | Sbjct 1743 T 1743 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||||| || ||||| | ||||||||||||||| || || Sbjct 2226 GTAGGTGTCGATGAGCAGACTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 2167 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || ||||| ||||| ||||||||| || || ||| ||||| ||| Sbjct 2166 CCCGTAGAAACACCGAGCCTCCGTCACCTGCACCTCCTGCATGAAGCGCTCCACC 2112 >seq62746 Length=64918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| || ||||| || ||||||| ||| | |||||||| |||| ||||| | Sbjct 60446 CACCTCCTCCACTGTCCAGAAGGACGCCTGGGCCTGCTTGTACATTTTCCAGATGTCAGG 60387 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || |||||||| ||||||||||||| | ||||||||| | | ||| ||||| Sbjct 60386 GTAATGTATGGGGAAAATCACAAACCTTCTGGGGTTTTCTTGAAGCAGTGGCTC 60333 >seq94371 Length=7202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| |||| || ||||| || || | ||| |||||||||||||| |||| |||| Sbjct 3190 GGAATCCCCCCCGATCAGCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGACGGGCGC 3131 Query 38406 ACCCTCAACGACTACAACATCCA-AAAGG 38433 || || ||||||||||||||| ||||| Sbjct 3130 ACTCTGTCCGACTACAACATCCAGAAAGG 3102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499197187944960