Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scartelaos_20histophorus_20[genbank_20GCA_5F000787155.1_202014-12- 02] 156,044 sequences; 695,008,792 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq104288 163 1e-34 seq105613 86.0 2e-11 >seq104288 Length=47184 Score = 163 bits (180), Expect = 1e-34 Identities = 285/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || |||||||| || || | ||| ||| |||||| Sbjct 1660 GGCAAGCCCAAAGTACAAGTGGAGTACAAAGGTGAGACGAAGGCATTTTATCCAGAAGAA 1601 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||| | ||| |||||||||| ||||| ||| | || | Sbjct 1600 ATCTCATCAATGGTTTTGGTTAAGATGAAAGAAATCGCAGAGGCCTATTTGGGGCAGAGA 1541 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | | ||||| || || || || |||||||||||||| | ||||| ||||| || Sbjct 1540 GTGTCCAACGCAGTCATCACAGTCCCTGCTTATTTCAATGACTCCCAACGCCAAGCCACA 1481 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 ||||| || ||| |||| ||||| ||||||| || |||| || |||||||| || ||| Sbjct 1480 AAAGACGCTGGAGTTATTTCTGGTCTAAATGTCCTGAGAATCATCAATGAACCAACTGCA 1421 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || ||| | |||||||| |||| || | ||| || || |||| || | | Sbjct 1420 GCAGCTATTGCATATGGTCTAGACAAGGGGA---AAAGAGGGGAGCGAAATGTTCTCATC 1364 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||| | || || || ||| || || | || | ||||||||||| | ||| Sbjct 1363 TTTGATCTGGGCGGCGGCACTTTCGACGTGTCCATTCTGACGATTGAAGATGGCATTTTT 1304 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| || || || ||| || || || | || || ||||| |||| ||| Sbjct 1303 GAAGTGAAAGCCACAGCTGGAGACACACACTTGGGTGGAGAAGACTTTGACAAT 1250 >seq105613 Length=24011 Score = 86.0 bits (94), Expect = 2e-11 Identities = 126/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATT 451486 ||||| |||||| | || ||||| || | || | ||| | | || || |||||| Sbjct 4938 ACAGCGGCTGCTATTGCTTATGGCCTGG----ATAAGAAGGAC--GGCGAGAAGAATATT 4885 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | || ||||| || ||||| || || |||| ||| | || | ||||| |||| Sbjct 4884 CTTGTGTTTGACTTGGGTGGTGGCACATTTGATGTCTCTCTTCTGACCATTGACAATGGT 4825 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||||| ||||| ||||||||||| || || |||||||||||||||||| | ||| Sbjct 4824 GTATTCGAAGTGGTTGCAACCAATGGAGACACCCATCTAGGAGGTGAAGATTTCGAT 4768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971768319036752